Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00965 and PS417_00970 are separated by 82 nucleotides PS417_00970 and PS417_00975 are separated by 15 nucleotides PS417_00975 and PS417_00985 are separated by 136 nucleotides
PS417_00965: PS417_00965 - AraC family transcriptional regulator, at 214,157 to 215,161
_00965
PS417_00970: PS417_00970 - hypothetical protein, at 215,244 to 216,023
_00970
PS417_00975: PS417_00975 - hypothetical protein, at 216,039 to 216,356
_00975
PS417_00985: PS417_00985 - MFS transporter, at 216,493 to 217,662
_00985
Position (kb) 216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 215.239 kb on - strand at 215.448 kb on + strand, within PS417_00970 at 215.449 kb on - strand, within PS417_00970 at 215.547 kb on + strand, within PS417_00970 at 215.548 kb on - strand, within PS417_00970 at 215.574 kb on - strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.868 kb on + strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 216.045 kb on + strand at 216.046 kb on - strand at 216.186 kb on + strand, within PS417_00975 at 216.186 kb on + strand, within PS417_00975 at 216.491 kb on - strand at 216.494 kb on + strand at 216.494 kb on + strand at 216.495 kb on - strand at 216.495 kb on - strand at 216.496 kb on + strand at 216.980 kb on + strand, within PS417_00985 at 217.010 kb on + strand, within PS417_00985 at 217.034 kb on + strand, within PS417_00985 at 217.257 kb on - strand, within PS417_00985
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 215,239 - -0.6 215,448 + PS417_00970 0.26 -0.4 215,449 - PS417_00970 0.26 -0.1 215,547 + PS417_00970 0.39 -0.5 215,548 - PS417_00970 0.39 -0.5 215,574 - PS417_00970 0.42 +1.2 215,832 + PS417_00970 0.75 +0.3 215,832 + PS417_00970 0.75 +0.0 215,833 - PS417_00970 0.76 +0.5 215,833 - PS417_00970 0.76 +0.0 215,868 + PS417_00970 0.80 -0.1 215,869 - PS417_00970 0.80 +0.0 215,869 - PS417_00970 0.80 +0.3 216,045 + -0.7 216,046 - +1.9 216,186 + PS417_00975 0.46 -1.0 216,186 + PS417_00975 0.46 -1.6 216,491 - -0.5 216,494 + -0.2 216,494 + +0.1 216,495 - -0.0 216,495 - -0.5 216,496 + +0.6 216,980 + PS417_00985 0.42 +0.1 217,010 + PS417_00985 0.44 -0.5 217,034 + PS417_00985 0.46 -0.5 217,257 - PS417_00985 0.65 -3.3
Or see this region's nucleotide sequence