Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00875 and PS417_00880 are separated by 778 nucleotides PS417_00880 and PS417_00885 are separated by 255 nucleotides
PS417_00875: PS417_00875 - hypothetical protein, at 195,747 to 196,052
_00875
PS417_00880: PS417_00880 - hypothetical protein, at 196,831 to 197,124
_00880
PS417_00885: PS417_00885 - integrase, at 197,380 to 198,615
_00885
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 196.157 kb on + strand at 196.158 kb on - strand at 196.200 kb on + strand at 196.308 kb on - strand at 196.337 kb on + strand at 196.337 kb on + strand at 196.396 kb on + strand at 196.397 kb on - strand at 196.397 kb on - strand at 196.397 kb on - strand at 196.533 kb on + strand at 196.632 kb on + strand at 196.677 kb on + strand at 196.678 kb on - strand at 196.678 kb on - strand at 196.680 kb on + strand at 196.681 kb on - strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.727 kb on - strand at 196.727 kb on - strand at 196.731 kb on - strand at 196.782 kb on - strand at 196.789 kb on + strand at 196.796 kb on + strand at 196.797 kb on - strand at 196.797 kb on - strand at 196.816 kb on - strand at 196.883 kb on + strand, within PS417_00880 at 196.883 kb on + strand, within PS417_00880 at 196.935 kb on - strand, within PS417_00880 at 196.975 kb on + strand, within PS417_00880 at 197.056 kb on + strand, within PS417_00880 at 197.057 kb on - strand, within PS417_00880 at 197.057 kb on - strand, within PS417_00880 at 197.057 kb on - strand, within PS417_00880 at 197.057 kb on - strand, within PS417_00880 at 197.058 kb on + strand, within PS417_00880 at 197.059 kb on - strand, within PS417_00880 at 197.116 kb on - strand at 197.344 kb on + strand at 197.412 kb on + strand at 197.425 kb on + strand at 197.425 kb on + strand at 197.447 kb on + strand at 197.481 kb on - strand at 197.493 kb on + strand at 197.494 kb on - strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.572 kb on + strand, within PS417_00885 at 197.696 kb on - strand, within PS417_00885 at 197.716 kb on - strand, within PS417_00885 at 197.725 kb on + strand, within PS417_00885 at 197.725 kb on + strand, within PS417_00885 at 197.726 kb on - strand, within PS417_00885 at 197.813 kb on - strand, within PS417_00885 at 197.875 kb on + strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.878 kb on + strand, within PS417_00885 at 197.878 kb on + strand, within PS417_00885 at 197.878 kb on + strand, within PS417_00885 at 197.879 kb on - strand, within PS417_00885 at 197.924 kb on + strand, within PS417_00885 at 197.925 kb on - strand, within PS417_00885 at 197.991 kb on + strand, within PS417_00885 at 197.992 kb on - strand, within PS417_00885 at 198.065 kb on + strand, within PS417_00885 at 198.065 kb on + strand, within PS417_00885 at 198.066 kb on - strand, within PS417_00885 at 198.066 kb on - strand, within PS417_00885
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 196,157 + +0.0 196,158 - -1.6 196,200 + +0.6 196,308 - -0.5 196,337 + +0.2 196,337 + -0.4 196,396 + +1.2 196,397 - -2.5 196,397 - -0.7 196,397 - -0.1 196,533 + +1.0 196,632 + +0.2 196,677 + -2.6 196,678 - +0.1 196,678 - +1.6 196,680 + -2.2 196,681 - +0.3 196,726 + -1.2 196,726 + +0.1 196,726 + +1.6 196,726 + -0.5 196,727 - +0.8 196,727 - -1.0 196,731 - +0.7 196,782 - -0.0 196,789 + -0.2 196,796 + -0.9 196,797 - +0.3 196,797 - +1.4 196,816 - -0.1 196,883 + PS417_00880 0.18 +0.5 196,883 + PS417_00880 0.18 +0.8 196,935 - PS417_00880 0.35 -0.5 196,975 + PS417_00880 0.49 +1.0 197,056 + PS417_00880 0.77 +0.1 197,057 - PS417_00880 0.77 -1.3 197,057 - PS417_00880 0.77 +0.2 197,057 - PS417_00880 0.77 +0.5 197,057 - PS417_00880 0.77 +2.6 197,058 + PS417_00880 0.77 +0.3 197,059 - PS417_00880 0.78 -0.1 197,116 - -0.7 197,344 + +0.2 197,412 + +0.5 197,425 + +1.3 197,425 + +0.0 197,447 + -0.1 197,481 - +0.0 197,493 + -0.0 197,494 - -0.4 197,495 + +0.1 197,495 + +1.1 197,496 - +0.9 197,496 - -1.4 197,496 - -0.7 197,572 + PS417_00885 0.16 +0.4 197,696 - PS417_00885 0.26 -1.0 197,716 - PS417_00885 0.27 +0.8 197,725 + PS417_00885 0.28 -1.3 197,725 + PS417_00885 0.28 -0.3 197,726 - PS417_00885 0.28 -0.0 197,813 - PS417_00885 0.35 -0.2 197,875 + PS417_00885 0.40 +0.2 197,876 - PS417_00885 0.40 +0.1 197,876 - PS417_00885 0.40 +0.8 197,876 - PS417_00885 0.40 +0.2 197,876 - PS417_00885 0.40 -0.4 197,878 + PS417_00885 0.40 -2.4 197,878 + PS417_00885 0.40 +0.2 197,878 + PS417_00885 0.40 -2.1 197,879 - PS417_00885 0.40 -0.7 197,924 + PS417_00885 0.44 +1.0 197,925 - PS417_00885 0.44 +1.6 197,991 + PS417_00885 0.49 +0.5 197,992 - PS417_00885 0.50 +0.2 198,065 + PS417_00885 0.55 -0.5 198,065 + PS417_00885 0.55 +0.2 198,066 - PS417_00885 0.56 +0.1 198,066 - PS417_00885 0.56 +0.2
Or see this region's nucleotide sequence