Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04500 and PS417_04505 are separated by 36 nucleotides PS417_04505 and PS417_04510 are separated by 131 nucleotides PS417_04510 and PS417_04515 are separated by 242 nucleotides
PS417_04500: PS417_04500 - hypothetical protein, at 994,290 to 994,550
_04500
PS417_04505: PS417_04505 - hypothetical protein, at 994,587 to 995,207
_04505
PS417_04510: PS417_04510 - chemotaxis protein, at 995,339 to 997,477
_04510
PS417_04515: PS417_04515 - peptidase M48, at 997,720 to 998,538
_04515
Position (kb) 995
996
997
998 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 994.485 kb on + strand, within PS417_04500 at 994.485 kb on + strand, within PS417_04500 at 994.548 kb on + strand at 994.549 kb on - strand at 995.272 kb on + strand at 995.279 kb on + strand at 995.279 kb on + strand at 995.280 kb on - strand at 995.280 kb on - strand at 995.280 kb on - strand at 995.285 kb on + strand at 995.285 kb on + strand at 995.285 kb on + strand at 995.286 kb on - strand at 995.286 kb on - strand at 995.286 kb on - strand at 995.286 kb on - strand at 995.286 kb on - strand at 996.088 kb on + strand, within PS417_04510 at 996.089 kb on - strand, within PS417_04510 at 996.572 kb on + strand, within PS417_04510 at 996.573 kb on - strand, within PS417_04510 at 996.665 kb on - strand, within PS417_04510 at 996.666 kb on + strand, within PS417_04510 at 996.667 kb on - strand, within PS417_04510 at 996.667 kb on - strand, within PS417_04510 at 996.720 kb on + strand, within PS417_04510 at 996.861 kb on + strand, within PS417_04510 at 996.862 kb on - strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.913 kb on - strand, within PS417_04510 at 996.913 kb on - strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 997.062 kb on + strand, within PS417_04510 at 997.062 kb on + strand, within PS417_04510 at 997.063 kb on - strand, within PS417_04510 at 997.108 kb on - strand, within PS417_04510 at 997.108 kb on - strand, within PS417_04510 at 997.395 kb on + strand at 997.395 kb on + strand at 997.501 kb on + strand at 997.501 kb on + strand at 997.609 kb on + strand at 997.609 kb on + strand at 997.647 kb on + strand at 997.648 kb on - strand at 997.674 kb on + strand at 997.675 kb on - strand at 997.739 kb on + strand at 997.740 kb on - strand at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.829 kb on - strand, within PS417_04515 at 997.829 kb on - strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 998.090 kb on - strand, within PS417_04515 at 998.291 kb on - strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.449 kb on - strand, within PS417_04515
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 994,485 + PS417_04500 0.75 +0.5 994,485 + PS417_04500 0.75 -0.8 994,548 + -0.1 994,549 - -1.3 995,272 + -0.3 995,279 + -1.8 995,279 + -1.7 995,280 - -0.4 995,280 - +0.1 995,280 - +0.2 995,285 + -0.3 995,285 + +2.1 995,285 + +0.3 995,286 - -0.0 995,286 - +2.3 995,286 - -0.1 995,286 - +0.7 995,286 - -0.0 996,088 + PS417_04510 0.35 -0.7 996,089 - PS417_04510 0.35 +0.9 996,572 + PS417_04510 0.58 +0.6 996,573 - PS417_04510 0.58 +0.1 996,665 - PS417_04510 0.62 +0.8 996,666 + PS417_04510 0.62 -0.4 996,667 - PS417_04510 0.62 -0.6 996,667 - PS417_04510 0.62 +0.4 996,720 + PS417_04510 0.65 +0.2 996,861 + PS417_04510 0.71 +0.5 996,862 - PS417_04510 0.71 +0.3 996,912 + PS417_04510 0.74 +0.2 996,912 + PS417_04510 0.74 +2.2 996,912 + PS417_04510 0.74 -1.2 996,913 - PS417_04510 0.74 -0.8 996,913 - PS417_04510 0.74 -0.3 996,915 + PS417_04510 0.74 -0.1 996,915 + PS417_04510 0.74 -0.2 996,915 + PS417_04510 0.74 +1.9 997,062 + PS417_04510 0.81 +0.8 997,062 + PS417_04510 0.81 -0.6 997,063 - PS417_04510 0.81 +0.1 997,108 - PS417_04510 0.83 +3.5 997,108 - PS417_04510 0.83 +0.9 997,395 + +0.1 997,395 + +0.3 997,501 + +0.7 997,501 + +2.2 997,609 + +0.1 997,609 + -0.5 997,647 + +0.8 997,648 - -0.3 997,674 + -0.1 997,675 - -0.6 997,739 + -1.7 997,740 - +0.0 997,828 + PS417_04515 0.13 +0.0 997,828 + PS417_04515 0.13 -1.0 997,828 + PS417_04515 0.13 +0.2 997,828 + PS417_04515 0.13 -0.3 997,829 - PS417_04515 0.13 -0.9 997,829 - PS417_04515 0.13 -0.6 997,870 + PS417_04515 0.18 -1.4 997,870 + PS417_04515 0.18 -1.3 997,870 + PS417_04515 0.18 +3.7 997,870 + PS417_04515 0.18 -0.2 997,870 + PS417_04515 0.18 -0.5 997,871 - PS417_04515 0.18 -0.2 997,871 - PS417_04515 0.18 -0.6 997,871 - PS417_04515 0.18 -0.9 997,871 - PS417_04515 0.18 -0.2 997,871 - PS417_04515 0.18 -0.6 997,871 - PS417_04515 0.18 -0.3 998,090 - PS417_04515 0.45 +0.0 998,291 - PS417_04515 0.70 +1.2 998,371 + PS417_04515 0.79 +0.7 998,371 + PS417_04515 0.79 -0.1 998,371 + PS417_04515 0.79 -1.3 998,449 - PS417_04515 0.89 -0.6
Or see this region's nucleotide sequence