Strain Fitness in Pseudomonas simiae WCS417 around PS417_04070

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_04065 and PS417_04070 are separated by 80 nucleotidesPS417_04070 and PS417_04075 are separated by 170 nucleotides PS417_04065: PS417_04065 - peptide ABC transporter substrate-binding protein, at 911,197 to 912,795 _04065 PS417_04070: PS417_04070 - porin, at 912,876 to 914,291 _04070 PS417_04075: PS417_04075 - peptide ABC transporter substrate-binding protein, at 914,462 to 916,066 _04075 Position (kb) 912 913 914 915Strain fitness (log2 ratio) -3 -2 -1 0 1at 911.900 kb on + strand, within PS417_04065at 911.901 kb on - strand, within PS417_04065at 911.901 kb on - strand, within PS417_04065at 912.061 kb on - strand, within PS417_04065at 912.113 kb on + strand, within PS417_04065at 912.114 kb on - strand, within PS417_04065at 912.409 kb on - strand, within PS417_04065at 912.491 kb on + strand, within PS417_04065at 912.492 kb on - strand, within PS417_04065at 912.672 kb on - strandat 912.779 kb on - strandat 912.863 kb on + strandat 912.873 kb on + strandat 912.899 kb on + strandat 912.900 kb on - strandat 912.964 kb on + strandat 912.964 kb on + strandat 912.964 kb on + strandat 912.980 kb on + strandat 913.073 kb on - strand, within PS417_04070at 913.073 kb on - strand, within PS417_04070at 913.280 kb on - strand, within PS417_04070at 913.328 kb on + strand, within PS417_04070at 913.367 kb on + strand, within PS417_04070at 913.420 kb on + strand, within PS417_04070at 913.484 kb on - strand, within PS417_04070at 913.861 kb on + strand, within PS417_04070at 913.861 kb on + strand, within PS417_04070at 913.928 kb on - strand, within PS417_04070at 913.928 kb on - strand, within PS417_04070at 913.928 kb on - strand, within PS417_04070at 913.931 kb on + strand, within PS417_04070at 913.933 kb on + strand, within PS417_04070at 914.071 kb on + strand, within PS417_04070at 914.121 kb on - strand, within PS417_04070at 914.153 kb on + strandat 914.318 kb on + strandat 914.474 kb on - strandat 914.613 kb on + strandat 914.673 kb on + strand, within PS417_04075at 914.697 kb on + strand, within PS417_04075at 914.727 kb on + strand, within PS417_04075at 914.728 kb on - strandat 914.821 kb on - strand, within PS417_04075at 914.821 kb on - strand, within PS417_04075at 914.835 kb on + strand, within PS417_04075at 914.916 kb on + strand, within PS417_04075at 915.180 kb on + strand, within PS417_04075at 915.190 kb on - strand, within PS417_04075at 915.190 kb on - strand, within PS417_04075at 915.190 kb on - strand, within PS417_04075

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml
remove
911,900 + PS417_04065 0.44 -0.5
911,901 - PS417_04065 0.44 -0.5
911,901 - PS417_04065 0.44 -1.0
912,061 - PS417_04065 0.54 +0.4
912,113 + PS417_04065 0.57 +0.6
912,114 - PS417_04065 0.57 -0.0
912,409 - PS417_04065 0.76 +0.0
912,491 + PS417_04065 0.81 +0.9
912,492 - PS417_04065 0.81 +0.6
912,672 - -1.6
912,779 - +0.1
912,863 + -0.5
912,873 + -0.4
912,899 + -1.6
912,900 - -0.4
912,964 + -1.2
912,964 + -0.5
912,964 + -1.0
912,980 + -0.1
913,073 - PS417_04070 0.14 -0.8
913,073 - PS417_04070 0.14 +0.2
913,280 - PS417_04070 0.29 -1.5
913,328 + PS417_04070 0.32 -1.5
913,367 + PS417_04070 0.35 +0.4
913,420 + PS417_04070 0.38 -0.7
913,484 - PS417_04070 0.43 -0.4
913,861 + PS417_04070 0.70 -0.4
913,861 + PS417_04070 0.70 -2.8
913,928 - PS417_04070 0.74 -1.0
913,928 - PS417_04070 0.74 -0.8
913,928 - PS417_04070 0.74 -0.9
913,931 + PS417_04070 0.75 -0.5
913,933 + PS417_04070 0.75 -1.3
914,071 + PS417_04070 0.84 -1.1
914,121 - PS417_04070 0.88 -0.4
914,153 + -0.4
914,318 + +0.1
914,474 - -1.2
914,613 + -2.0
914,673 + PS417_04075 0.13 +0.2
914,697 + PS417_04075 0.15 -0.6
914,727 + PS417_04075 0.17 -1.1
914,728 - +0.4
914,821 - PS417_04075 0.22 +0.1
914,821 - PS417_04075 0.22 +0.1
914,835 + PS417_04075 0.23 -0.1
914,916 + PS417_04075 0.28 -0.7
915,180 + PS417_04075 0.45 -0.1
915,190 - PS417_04075 0.45 -0.8
915,190 - PS417_04075 0.45 -0.3
915,190 - PS417_04075 0.45 -1.2

Or see this region's nucleotide sequence