Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02845 and PS417_02850 overlap by 4 nucleotides PS417_02850 and PS417_02855 overlap by 4 nucleotides PS417_02855 and PS417_02860 are separated by 23 nucleotides
PS417_02845: PS417_02845 - ABC transporter permease, at 649,583 to 650,593
_02845
PS417_02850: PS417_02850 - iron ABC transporter substrate-binding protein, at 650,590 to 651,537
_02850
PS417_02855: PS417_02855 - histidinol phosphatase, at 651,534 to 652,316
_02855
PS417_02860: PS417_02860 - TonB-dependent receptor, at 652,340 to 654,448
_02860
Position (kb) 651
652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 650.568 kb on - strand at 650.570 kb on + strand at 650.570 kb on + strand at 650.570 kb on + strand at 650.663 kb on + strand at 650.677 kb on - strand at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.839 kb on + strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.840 kb on - strand, within PS417_02850 at 650.853 kb on + strand, within PS417_02850 at 650.936 kb on + strand, within PS417_02850 at 651.015 kb on + strand, within PS417_02850 at 651.066 kb on + strand, within PS417_02850 at 651.067 kb on - strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.068 kb on + strand, within PS417_02850 at 651.069 kb on - strand, within PS417_02850 at 651.069 kb on - strand, within PS417_02850 at 651.131 kb on + strand, within PS417_02850 at 651.254 kb on + strand, within PS417_02850 at 651.254 kb on + strand, within PS417_02850 at 651.464 kb on + strand at 651.554 kb on + strand at 651.641 kb on + strand, within PS417_02855 at 651.641 kb on + strand, within PS417_02855 at 651.678 kb on + strand, within PS417_02855 at 651.785 kb on - strand, within PS417_02855 at 651.969 kb on - strand, within PS417_02855 at 652.145 kb on + strand, within PS417_02855 at 652.145 kb on + strand, within PS417_02855 at 652.350 kb on + strand at 652.351 kb on - strand at 652.351 kb on - strand at 652.410 kb on + strand at 652.410 kb on + strand at 652.410 kb on + strand at 652.411 kb on - strand at 652.425 kb on + strand at 652.425 kb on + strand at 652.426 kb on - strand at 652.512 kb on + strand at 652.736 kb on + strand, within PS417_02860 at 652.736 kb on + strand, within PS417_02860 at 652.737 kb on - strand, within PS417_02860 at 652.786 kb on + strand, within PS417_02860 at 652.916 kb on - strand, within PS417_02860 at 653.011 kb on - strand, within PS417_02860 at 653.019 kb on + strand, within PS417_02860 at 653.134 kb on - strand, within PS417_02860 at 653.168 kb on - strand, within PS417_02860
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 650,568 - +0.5 650,570 + -0.1 650,570 + +2.6 650,570 + -0.2 650,663 + +1.1 650,677 - -0.0 650,839 + PS417_02850 0.26 +0.5 650,839 + PS417_02850 0.26 -1.8 650,839 + PS417_02850 0.26 -0.8 650,839 + PS417_02850 0.26 -0.7 650,839 + PS417_02850 0.26 -0.8 650,840 - PS417_02850 0.26 +0.9 650,840 - PS417_02850 0.26 -0.2 650,840 - PS417_02850 0.26 -0.7 650,840 - PS417_02850 0.26 +0.3 650,853 + PS417_02850 0.28 +0.9 650,936 + PS417_02850 0.36 -0.9 651,015 + PS417_02850 0.45 +0.5 651,066 + PS417_02850 0.50 -0.9 651,067 - PS417_02850 0.50 +0.3 651,068 + PS417_02850 0.50 +1.0 651,068 + PS417_02850 0.50 +0.3 651,068 + PS417_02850 0.50 +0.9 651,068 + PS417_02850 0.50 +2.2 651,068 + PS417_02850 0.50 -3.7 651,069 - PS417_02850 0.51 -0.1 651,069 - PS417_02850 0.51 +1.6 651,131 + PS417_02850 0.57 +1.0 651,254 + PS417_02850 0.70 +0.1 651,254 + PS417_02850 0.70 +1.0 651,464 + -0.5 651,554 + +0.2 651,641 + PS417_02855 0.14 +1.8 651,641 + PS417_02855 0.14 -0.4 651,678 + PS417_02855 0.18 +0.2 651,785 - PS417_02855 0.32 -1.7 651,969 - PS417_02855 0.56 +0.9 652,145 + PS417_02855 0.78 +0.1 652,145 + PS417_02855 0.78 +1.9 652,350 + +0.4 652,351 - -1.2 652,351 - -1.5 652,410 + -0.6 652,410 + +0.3 652,410 + -0.8 652,411 - +1.2 652,425 + -0.3 652,425 + -2.7 652,426 - +1.6 652,512 + -0.2 652,736 + PS417_02860 0.19 -0.4 652,736 + PS417_02860 0.19 -1.0 652,737 - PS417_02860 0.19 -0.1 652,786 + PS417_02860 0.21 +1.0 652,916 - PS417_02860 0.27 -0.4 653,011 - PS417_02860 0.32 +1.6 653,019 + PS417_02860 0.32 -1.4 653,134 - PS417_02860 0.38 -0.0 653,168 - PS417_02860 0.39 -1.5
Or see this region's nucleotide sequence