Strain Fitness in Pseudomonas simiae WCS417 around PS417_24990

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
5,418,562	+				+0.0
5,418,722	+				+0.1
5,418,723	-				-3.2
5,418,737	-				-1.3
5,418,868	+				-0.7
5,418,868	+				+0.2
5,418,869	-				-0.7
5,418,869	-				+1.1
5,418,869	-				+1.0
5,418,899	-				-0.0
5,418,899	-				+2.2
5,418,906	+				+0.6
5,418,906	+				-0.4
5,418,907	-				+1.3
5,418,907	-				-0.2
5,418,907	-				+0.8
5,418,937	+		PS417_24985	0.19	+0.0
5,418,938	-		PS417_24985	0.20	-0.0
5,418,957	+		PS417_24985	0.29	+0.7
5,418,957	+		PS417_24985	0.29	+0.4
5,418,957	+		PS417_24985	0.29	-0.0
5,418,958	-		PS417_24985	0.29	-0.1
5,418,958	-		PS417_24985	0.29	+0.1
5,418,958	-		PS417_24985	0.29	+0.1
5,418,958	-		PS417_24985	0.29	-0.0
5,418,958	-		PS417_24985	0.29	-0.4
5,418,958	-		PS417_24985	0.29	+0.4
5,418,958	-		PS417_24985	0.29	+0.7
5,418,958	-		PS417_24985	0.29	-0.2
5,419,134	+				-0.2
5,419,134	+				+2.6
5,419,134	+				-0.4
5,419,135	-				-0.4
5,419,135	-				+0.3
5,419,148	-				-1.0
5,419,152	+				+1.4
5,419,153	-				+0.0
5,419,153	-				-1.1
5,419,153	-				-0.3
5,419,302	-				-0.5
5,419,374	+				-0.6
5,419,375	-				+0.1
5,419,390	-				-1.7
5,419,390	-				+0.9
5,419,407	+				-1.8
5,419,509	-				+0.1
5,419,509	-				-0.6
5,419,509	-				+0.5
5,419,512	+				-0.0
5,419,513	-				+0.4
5,419,513	-				+0.5
5,419,513	-				+1.2
5,419,647	-		PS417_24990	0.17	-1.7
5,419,647	-		PS417_24990	0.17	-1.9
5,419,907	+		PS417_24990	0.64	-0.4
5,419,908	-		PS417_24990	0.64	-1.1
5,419,909	+		PS417_24990	0.64	-1.2
5,419,917	+		PS417_24990	0.66	-0.1
5,419,987	+		PS417_24990	0.79	+2.0
5,420,021	+		PS417_24990	0.85	-0.4
5,420,083	-				+1.6
5,420,124	-				-0.0
5,420,124	-				+0.6
5,420,152	-				-3.0
5,420,203	+				-0.4
5,420,206	+				-1.2
5,420,244	+				+0.5
5,420,245	-				+1.4
5,420,298	+				+1.1
5,420,299	-				+0.4
5,420,373	+				+0.6
5,420,388	+				-0.0
5,420,389	-				-0.6
5,420,391	+				-0.2
5,420,391	+				-0.1
5,420,391	+				+1.4
5,420,391	+				-2.0
5,420,392	-				-0.5
5,420,393	+				-0.0
5,420,411	+				+1.1
5,420,485	-				-0.6
5,420,524	-				-0.2
5,420,553	+				-0.3
5,420,554	-				+0.5
5,420,554	-				+0.1
5,420,559	+				+0.3
5,420,566	+				-0.9
5,420,584	+				-1.2
5,420,608	-				-0.2
5,420,609	+				+0.3
5,420,610	-				+0.3
5,420,628	-				+0.2
5,420,712	+		PS417_24995	0.19	-0.5
5,420,713	-		PS417_24995	0.19	+1.2
5,420,808	+		PS417_24995	0.37	-0.7
5,420,866	+		PS417_24995	0.49	-1.4
5,420,866	+		PS417_24995	0.49	-0.4
5,420,867	-		PS417_24995	0.49	-0.7
5,420,867	-		PS417_24995	0.49	-1.1
5,421,004	+		PS417_24995	0.75	-0.4
5,421,007	+		PS417_24995	0.76	-0.2
5,421,008	-		PS417_24995	0.76	-0.7
5,421,008	-		PS417_24995	0.76	+2.8
5,421,086	-				+0.2