Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21925 and PS417_21930 are separated by 81 nucleotides PS417_21930 and PS417_21935 are separated by 88 nucleotides PS417_21935 and PS417_21940 are separated by 11 nucleotides PS417_21940 and PS417_21945 are separated by 204 nucleotides
PS417_21925: PS417_21925 - short-chain dehydrogenase, at 4,758,024 to 4,758,782
_21925
PS417_21930: PS417_21930 - membrane protein, at 4,758,864 to 4,759,328
_21930
PS417_21935: PS417_21935 - transcriptional regulator, at 4,759,417 to 4,760,271
_21935
PS417_21940: PS417_21940 - hypothetical protein, at 4,760,283 to 4,760,528
_21940
PS417_21945: PS417_21945 - RNA polymerase subunit sigma-24, at 4,760,733 to 4,761,956
_21945
Position (kb) 4759
4760
4761 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4758.446 kb on + strand, within PS417_21925 at 4758.447 kb on - strand, within PS417_21925 at 4758.447 kb on - strand, within PS417_21925 at 4758.493 kb on - strand, within PS417_21925 at 4758.894 kb on - strand at 4758.940 kb on + strand, within PS417_21930 at 4758.952 kb on + strand, within PS417_21930 at 4758.953 kb on - strand, within PS417_21930 at 4758.953 kb on - strand, within PS417_21930 at 4758.953 kb on - strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.958 kb on + strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.959 kb on - strand, within PS417_21930 at 4758.964 kb on + strand, within PS417_21930 at 4759.001 kb on + strand, within PS417_21930 at 4759.391 kb on - strand at 4759.554 kb on - strand, within PS417_21935 at 4759.721 kb on - strand, within PS417_21935 at 4759.721 kb on - strand, within PS417_21935 at 4759.959 kb on - strand, within PS417_21935 at 4760.117 kb on + strand, within PS417_21935 at 4760.323 kb on + strand at 4760.394 kb on - strand, within PS417_21940 at 4760.592 kb on + strand at 4760.722 kb on + strand at 4760.821 kb on + strand at 4760.894 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.022 kb on - strand, within PS417_21945 at 4761.028 kb on + strand, within PS417_21945 at 4761.028 kb on + strand, within PS417_21945
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 4,758,446 + PS417_21925 0.56 -0.7 4,758,447 - PS417_21925 0.56 +1.2 4,758,447 - PS417_21925 0.56 -0.2 4,758,493 - PS417_21925 0.62 -1.0 4,758,894 - -1.1 4,758,940 + PS417_21930 0.16 +1.2 4,758,952 + PS417_21930 0.19 +2.2 4,758,953 - PS417_21930 0.19 -0.4 4,758,953 - PS417_21930 0.19 +0.4 4,758,953 - PS417_21930 0.19 -0.5 4,758,958 + PS417_21930 0.20 -1.0 4,758,958 + PS417_21930 0.20 -0.0 4,758,958 + PS417_21930 0.20 -1.7 4,758,958 + PS417_21930 0.20 -0.2 4,758,958 + PS417_21930 0.20 +0.2 4,758,958 + PS417_21930 0.20 +0.4 4,758,958 + PS417_21930 0.20 -0.6 4,758,958 + PS417_21930 0.20 +0.1 4,758,958 + PS417_21930 0.20 +0.4 4,758,958 + PS417_21930 0.20 +0.2 4,758,959 - PS417_21930 0.20 +0.6 4,758,959 - PS417_21930 0.20 -0.0 4,758,959 - PS417_21930 0.20 -1.8 4,758,959 - PS417_21930 0.20 -0.5 4,758,959 - PS417_21930 0.20 +0.8 4,758,959 - PS417_21930 0.20 +0.4 4,758,964 + PS417_21930 0.22 -1.7 4,759,001 + PS417_21930 0.29 -0.1 4,759,391 - -0.0 4,759,554 - PS417_21935 0.16 +0.8 4,759,721 - PS417_21935 0.36 +0.6 4,759,721 - PS417_21935 0.36 +0.6 4,759,959 - PS417_21935 0.63 +0.5 4,760,117 + PS417_21935 0.82 +0.2 4,760,323 + +0.6 4,760,394 - PS417_21940 0.45 +2.0 4,760,592 + +0.2 4,760,722 + +0.4 4,760,821 + +0.2 4,760,894 - PS417_21945 0.13 -1.6 4,761,022 - PS417_21945 0.24 -0.8 4,761,022 - PS417_21945 0.24 -2.5 4,761,022 - PS417_21945 0.24 -0.1 4,761,028 + PS417_21945 0.24 -0.7 4,761,028 + PS417_21945 0.24 -0.0
Or see this region's nucleotide sequence