Strain Fitness in Pseudomonas simiae WCS417 around PS417_20540

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
4,458,088	+		PS417_20530	0.67	-1.6
4,458,088	+		PS417_20530	0.67	-0.4
4,458,089	-		PS417_20530	0.67	-2.0
4,458,089	-		PS417_20530	0.67	-0.2
4,458,089	-		PS417_20530	0.67	+0.0
4,458,184	+		PS417_20530	0.79	-1.4
4,458,184	+		PS417_20530	0.79	-2.1
4,458,184	+		PS417_20530	0.79	-0.3
4,458,185	-		PS417_20530	0.79	+0.1
4,458,185	-		PS417_20530	0.79	-0.4
4,458,185	-		PS417_20530	0.79	-0.5
4,458,185	-		PS417_20530	0.79	-0.3
4,458,185	-		PS417_20530	0.79	-1.1
4,458,212	-		PS417_20530	0.83	-0.1
4,458,215	+		PS417_20530	0.83	-1.3
4,458,216	-		PS417_20530	0.83	-0.5
4,458,440	+		PS417_20535	0.15	+0.8
4,458,440	+		PS417_20535	0.15	+0.1
4,458,440	+		PS417_20535	0.15	+1.2
4,458,523	+		PS417_20535	0.30	-0.7
4,458,523	+		PS417_20535	0.30	+0.3
4,458,523	+		PS417_20535	0.30	+0.7
4,458,524	-		PS417_20535	0.30	-0.5
4,458,541	+		PS417_20535	0.33	-0.4
4,458,671	+		PS417_20535	0.56	+0.6
4,458,671	+		PS417_20535	0.56	-0.0
4,458,672	-		PS417_20535	0.56	-0.3
4,458,672	-		PS417_20535	0.56	-1.3
4,458,672	-		PS417_20535	0.56	-2.0
4,458,672	-		PS417_20535	0.56	-0.6
4,458,889	+				-1.2
4,458,889	+				-0.2
4,458,890	-				-3.1
4,458,890	-				+0.3
4,458,921	+				-0.7
4,458,928	+				+1.0
4,458,929	-				-1.1
4,458,992	+				-0.3
4,458,993	-				-0.2
4,458,993	-				-0.5
4,458,996	+				-1.8
4,458,996	+				-0.0
4,458,996	+				+0.8
4,458,996	+				+0.7
4,458,997	-				-0.3
4,458,997	-				-0.2
4,458,997	-				-2.0
4,458,997	-				-0.3
4,458,997	-				-1.3
4,458,997	-				-0.9
4,459,082	+				-1.0
4,459,088	+				-1.1
4,459,089	-				+1.6
4,459,089	-				-0.3
4,459,091	+				+1.0
4,459,092	-				-0.0
4,459,370	+		PS417_20540	0.20	+0.2
4,459,371	-		PS417_20540	0.20	+0.3
4,459,421	-		PS417_20540	0.23	-0.5
4,459,497	+		PS417_20540	0.27	-0.4
4,459,497	+		PS417_20540	0.27	-0.3
4,459,505	+		PS417_20540	0.28	+1.9
4,459,505	+				-1.2
4,459,505	+		PS417_20540	0.28	-1.8
4,459,506	-		PS417_20540	0.28	-2.0
4,459,601	+		PS417_20540	0.33	+0.8
4,459,736	+		PS417_20540	0.40	-1.4
4,459,846	+		PS417_20540	0.46	-1.2
4,460,109	-		PS417_20540	0.61	+1.0
4,460,232	-		PS417_20540	0.67	+1.1
4,460,781	-				-0.8
4,460,843	+				+0.3
4,460,844	-				+0.4
4,460,844	-				+0.2
4,460,844	-				+0.1
4,460,845	+				+1.6
4,460,845	+				-1.0
4,460,845	+				+0.8
4,460,845	+				-1.5
4,460,846	-				-0.4
4,461,028	-				-0.5
4,461,086	-				+0.1
4,461,086	-				-0.3
4,461,107	-				+1.5
4,461,157	+				+0.5
4,461,158	-				+0.3
4,461,296	+		PS417_20545	0.25	-0.1
4,461,297	-		PS417_20545	0.25	-0.5
4,461,378	+		PS417_20545	0.36	+0.3
4,461,379	-		PS417_20545	0.36	+0.8
4,461,379	-		PS417_20545	0.36	+0.5
4,461,426	+		PS417_20545	0.43	-0.2
4,461,426	+		PS417_20545	0.43	+1.0
4,461,427	-		PS417_20545	0.43	-1.1
4,461,427	-		PS417_20545	0.43	+0.1
4,461,792	+				-0.4
4,461,822	+				-0.2
4,461,822	+				-0.2