Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01625 and PS417_01630 overlap by 2 nucleotides PS417_01630 and PS417_01635 are separated by 532 nucleotides PS417_01635 and PS417_01640 overlap by 4 nucleotides
PS417_01625: PS417_01625 - rRNA methylase, at 356,742 to 357,197
_01625
PS417_01630: PS417_01630 - hypothetical protein, at 357,196 to 357,636
_01630
PS417_01635: PS417_01635 - nitrogen regulation protein NR(I), at 358,169 to 359,605
_01635
PS417_01640: PS417_01640 - histidine kinase, at 359,602 to 360,687
_01640
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 357.261 kb on + strand, within PS417_01630 at 357.262 kb on - strand, within PS417_01630 at 357.818 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 358.085 kb on + strand at 358.085 kb on + strand at 358.112 kb on + strand at 358.113 kb on - strand at 358.114 kb on + strand at 358.114 kb on + strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.244 kb on - strand at 358.563 kb on + strand, within PS417_01635 at 358.563 kb on + strand, within PS417_01635 at 358.781 kb on + strand, within PS417_01635 at 358.781 kb on + strand, within PS417_01635 at 358.782 kb on - strand, within PS417_01635 at 359.302 kb on - strand, within PS417_01635 at 359.486 kb on + strand at 359.486 kb on + strand at 359.486 kb on + strand at 359.487 kb on - strand at 359.561 kb on - strand at 359.938 kb on - strand, within PS417_01640 at 359.938 kb on - strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.942 kb on - strand, within PS417_01640 at 359.942 kb on - strand, within PS417_01640 at 360.408 kb on - strand, within PS417_01640 at 360.599 kb on + strand at 360.599 kb on + strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 357,261 + PS417_01630 0.15 -0.4 357,262 - PS417_01630 0.15 -1.0 357,818 - +0.3 357,843 - +1.3 357,843 - +0.1 357,843 - +0.1 357,843 - -0.3 357,843 - -1.1 357,843 - +0.2 358,085 + +0.8 358,085 + -0.6 358,112 + -1.3 358,113 - -0.2 358,114 + +0.3 358,114 + -0.2 358,115 - +0.1 358,115 - +1.2 358,115 - -0.5 358,244 - -1.0 358,563 + PS417_01635 0.27 -0.8 358,563 + PS417_01635 0.27 -1.0 358,781 + PS417_01635 0.43 -1.5 358,781 + PS417_01635 0.43 +1.6 358,782 - PS417_01635 0.43 -0.9 359,302 - PS417_01635 0.79 -1.3 359,486 + -0.4 359,486 + -0.5 359,486 + -0.1 359,487 - -0.3 359,561 - -0.2 359,938 - PS417_01640 0.31 +1.0 359,938 - PS417_01640 0.31 +0.9 359,941 + PS417_01640 0.31 +0.8 359,941 + PS417_01640 0.31 -2.1 359,941 + PS417_01640 0.31 +2.9 359,942 - PS417_01640 0.31 +2.8 359,942 - PS417_01640 0.31 +1.5 360,408 - PS417_01640 0.74 +1.2 360,599 + -0.9 360,599 + -1.6 360,600 - +1.1 360,600 - +0.8 360,600 - +0.3
Or see this region's nucleotide sequence