Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01230 and PS417_01235 overlap by 28 nucleotides PS417_01235 and PS417_01245 are separated by 345 nucleotides PS417_01245 and PS417_01250 are separated by 284 nucleotides
PS417_01230: PS417_01230 - hypothetical protein, at 268,878 to 269,123
_01230
PS417_01235: PS417_01235 - cell division protein Fic, at 269,096 to 269,695
_01235
PS417_01245: PS417_01245 - hypothetical protein, at 270,041 to 271,216
_01245
PS417_01250: PS417_01250 - ATP-dependent DNA helicase RecQ, at 271,501 to 273,438
_01250
Position (kb)
270
271
272 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 269.078 kb on + strand, within PS417_01230 at 269.119 kb on + strand at 269.120 kb on - strand at 269.173 kb on + strand, within PS417_01235 at 269.173 kb on + strand, within PS417_01235 at 269.361 kb on + strand, within PS417_01235 at 269.361 kb on + strand, within PS417_01235 at 269.362 kb on - strand, within PS417_01235 at 269.485 kb on - strand, within PS417_01235 at 269.512 kb on + strand, within PS417_01235 at 269.513 kb on - strand, within PS417_01235 at 269.513 kb on - strand, within PS417_01235 at 269.513 kb on - strand, within PS417_01235 at 269.535 kb on + strand, within PS417_01235 at 269.536 kb on - strand, within PS417_01235 at 269.828 kb on + strand at 269.873 kb on + strand at 269.899 kb on + strand at 269.949 kb on + strand at 269.982 kb on + strand at 269.983 kb on - strand at 269.983 kb on - strand at 269.983 kb on - strand at 270.004 kb on + strand at 270.005 kb on - strand at 270.022 kb on + strand at 270.023 kb on - strand at 270.023 kb on - strand at 270.026 kb on + strand at 270.026 kb on + strand at 270.027 kb on - strand at 270.027 kb on - strand at 270.036 kb on + strand at 270.037 kb on - strand at 270.037 kb on - strand at 270.124 kb on - strand at 270.332 kb on + strand, within PS417_01245 at 270.332 kb on + strand, within PS417_01245 at 270.332 kb on + strand, within PS417_01245 at 270.333 kb on - strand, within PS417_01245 at 270.333 kb on - strand, within PS417_01245 at 270.500 kb on + strand, within PS417_01245 at 270.536 kb on + strand, within PS417_01245 at 270.548 kb on + strand, within PS417_01245 at 270.548 kb on + strand, within PS417_01245 at 270.549 kb on - strand, within PS417_01245 at 270.549 kb on - strand, within PS417_01245 at 270.549 kb on - strand, within PS417_01245 at 270.549 kb on - strand, within PS417_01245 at 270.549 kb on - strand, within PS417_01245 at 270.555 kb on - strand, within PS417_01245 at 270.555 kb on - strand, within PS417_01245 at 270.633 kb on - strand, within PS417_01245 at 270.633 kb on - strand, within PS417_01245 at 270.633 kb on - strand, within PS417_01245 at 270.633 kb on - strand, within PS417_01245 at 270.655 kb on + strand, within PS417_01245 at 270.659 kb on + strand, within PS417_01245 at 270.659 kb on + strand, within PS417_01245 at 270.662 kb on + strand, within PS417_01245 at 270.662 kb on + strand, within PS417_01245 at 270.662 kb on + strand, within PS417_01245 at 270.843 kb on + strand, within PS417_01245 at 270.844 kb on - strand, within PS417_01245 at 270.986 kb on + strand, within PS417_01245 at 271.085 kb on + strand, within PS417_01245 at 271.085 kb on + strand, within PS417_01245 at 271.085 kb on + strand, within PS417_01245 at 271.088 kb on + strand, within PS417_01245 at 271.088 kb on + strand, within PS417_01245 at 271.089 kb on - strand, within PS417_01245 at 271.106 kb on + strand at 271.107 kb on - strand at 271.225 kb on + strand at 271.225 kb on + strand at 271.225 kb on + strand at 271.226 kb on - strand at 271.283 kb on + strand at 271.283 kb on + strand at 271.284 kb on - strand at 271.284 kb on - strand at 271.284 kb on - strand at 271.284 kb on - strand at 271.284 kb on - strand at 271.347 kb on + strand at 271.348 kb on - strand at 271.348 kb on - strand at 271.348 kb on - strand at 271.348 kb on - strand at 271.402 kb on + strand at 271.402 kb on + strand at 271.402 kb on + strand at 271.402 kb on + strand at 271.402 kb on + strand at 271.403 kb on - strand at 271.403 kb on - strand at 271.403 kb on - strand at 271.403 kb on - strand at 271.460 kb on - strand at 271.474 kb on - strand at 271.633 kb on + strand at 271.731 kb on + strand, within PS417_01250 at 271.731 kb on + strand, within PS417_01250 at 271.747 kb on - strand, within PS417_01250 at 271.915 kb on - strand, within PS417_01250 at 271.967 kb on - strand, within PS417_01250 at 272.089 kb on + strand, within PS417_01250
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 269,078 + PS417_01230 0.81 +0.3 269,119 + +0.9 269,120 - +0.3 269,173 + PS417_01235 0.13 +0.6 269,173 + PS417_01235 0.13 -0.4 269,361 + PS417_01235 0.44 -0.3 269,361 + PS417_01235 0.44 -0.8 269,362 - PS417_01235 0.44 +1.0 269,485 - PS417_01235 0.65 -0.5 269,512 + PS417_01235 0.69 -1.0 269,513 - PS417_01235 0.69 -0.7 269,513 - PS417_01235 0.69 +0.6 269,513 - PS417_01235 0.69 -0.1 269,535 + PS417_01235 0.73 -0.4 269,536 - PS417_01235 0.73 +0.0 269,828 + -0.5 269,873 + +0.6 269,899 + -0.1 269,949 + -0.7 269,982 + -0.6 269,983 - +0.5 269,983 - +0.4 269,983 - -0.0 270,004 + +0.0 270,005 - -0.2 270,022 + -0.2 270,023 - -1.7 270,023 - -0.4 270,026 + -0.5 270,026 + +1.3 270,027 - +0.1 270,027 - -0.2 270,036 + +0.1 270,037 - +0.6 270,037 - -1.7 270,124 - +0.4 270,332 + PS417_01245 0.25 -0.7 270,332 + PS417_01245 0.25 +1.1 270,332 + PS417_01245 0.25 +0.4 270,333 - PS417_01245 0.25 +1.0 270,333 - PS417_01245 0.25 +0.4 270,500 + PS417_01245 0.39 +0.6 270,536 + PS417_01245 0.42 +0.0 270,548 + PS417_01245 0.43 +0.2 270,548 + PS417_01245 0.43 +0.5 270,549 - PS417_01245 0.43 -2.0 270,549 - PS417_01245 0.43 +0.0 270,549 - PS417_01245 0.43 -0.5 270,549 - PS417_01245 0.43 +1.6 270,549 - PS417_01245 0.43 +1.2 270,555 - PS417_01245 0.44 +1.6 270,555 - PS417_01245 0.44 +0.3 270,633 - PS417_01245 0.50 +0.1 270,633 - PS417_01245 0.50 -0.7 270,633 - PS417_01245 0.50 -0.7 270,633 - PS417_01245 0.50 -2.0 270,655 + PS417_01245 0.52 -0.4 270,659 + PS417_01245 0.53 -0.6 270,659 + PS417_01245 0.53 -2.4 270,662 + PS417_01245 0.53 -1.0 270,662 + PS417_01245 0.53 +1.9 270,662 + PS417_01245 0.53 +3.7 270,843 + PS417_01245 0.68 +1.0 270,844 - PS417_01245 0.68 +0.9 270,986 + PS417_01245 0.80 -0.7 271,085 + PS417_01245 0.89 -0.4 271,085 + PS417_01245 0.89 -0.5 271,085 + PS417_01245 0.89 -1.2 271,088 + PS417_01245 0.89 +0.0 271,088 + PS417_01245 0.89 +0.1 271,089 - PS417_01245 0.89 -0.4 271,106 + -0.8 271,107 - -1.2 271,225 + -0.3 271,225 + +0.6 271,225 + -0.7 271,226 - +0.1 271,283 + -0.6 271,283 + +0.2 271,284 - -1.0 271,284 - -0.3 271,284 - +1.1 271,284 - -1.7 271,284 - -0.5 271,347 + -0.1 271,348 - -0.4 271,348 - -0.4 271,348 - -0.4 271,348 - -0.4 271,402 + -0.1 271,402 + -0.8 271,402 + -0.0 271,402 + -1.2 271,402 + -1.2 271,403 - +0.3 271,403 - -0.7 271,403 - +0.1 271,403 - -0.5 271,460 - +0.3 271,474 - +1.6 271,633 + -0.3 271,731 + PS417_01250 0.12 +1.5 271,731 + PS417_01250 0.12 -1.5 271,747 - PS417_01250 0.13 -0.1 271,915 - PS417_01250 0.21 -0.8 271,967 - PS417_01250 0.24 +0.4 272,089 + PS417_01250 0.30 +1.6
Or see this region's nucleotide sequence