Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01170 and PS417_01175 are separated by 117 nucleotides PS417_01175 and PS417_01180 are separated by 140 nucleotides
PS417_01170: PS417_01170 - chemotaxis protein CheY, at 258,394 to 259,134
_01170
PS417_01175: PS417_01175 - ATPase, at 259,252 to 260,565
_01175
PS417_01180: PS417_01180 - ribosomal protein S6 modification protein, at 260,706 to 261,611
_01180
Position (kb) 259
260
261 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 258.345 kb on + strand at 258.345 kb on + strand at 258.379 kb on + strand at 259.236 kb on + strand at 259.237 kb on - strand at 259.237 kb on - strand at 259.237 kb on - strand at 259.240 kb on + strand at 259.240 kb on + strand at 259.240 kb on + strand at 259.240 kb on + strand at 260.564 kb on - strand at 260.564 kb on - strand at 260.582 kb on + strand at 260.615 kb on + strand at 260.615 kb on + strand at 260.615 kb on + strand at 260.616 kb on - strand at 260.732 kb on + strand at 260.733 kb on - strand at 261.076 kb on + strand, within PS417_01180 at 261.301 kb on - strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.397 kb on + strand, within PS417_01180 at 261.398 kb on - strand, within PS417_01180 at 261.406 kb on - strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.499 kb on + strand, within PS417_01180 at 261.500 kb on - strand, within PS417_01180
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 258,345 + +3.4 258,345 + +1.0 258,379 + +1.3 259,236 + +1.0 259,237 - -2.6 259,237 - -2.7 259,237 - -1.2 259,240 + +0.3 259,240 + -0.1 259,240 + +0.5 259,240 + +0.1 260,564 - -0.6 260,564 - +0.6 260,582 + +0.2 260,615 + +0.0 260,615 + +0.8 260,615 + -0.4 260,616 - -1.0 260,732 + +0.8 260,733 - +1.6 261,076 + PS417_01180 0.41 +0.3 261,301 - PS417_01180 0.66 +1.3 261,397 + PS417_01180 0.76 +0.2 261,397 + PS417_01180 0.76 +0.8 261,397 + PS417_01180 0.76 +0.5 261,398 - PS417_01180 0.76 -2.3 261,406 - PS417_01180 0.77 +0.8 261,499 + PS417_01180 0.88 +0.7 261,499 + PS417_01180 0.88 -0.1 261,499 + PS417_01180 0.88 +0.2 261,499 + PS417_01180 0.88 +0.4 261,499 + PS417_01180 0.88 +0.5 261,500 - PS417_01180 0.88 +0.7
Or see this region's nucleotide sequence