Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01050 and PS417_01055 are separated by 118 nucleotides PS417_01055 and PS417_01060 are separated by 423 nucleotides
PS417_01050: PS417_01050 - ACR family transporter, at 228,326 to 231,391
_01050
PS417_01055: PS417_01055 - methyltransferase, at 231,510 to 232,136
_01055
PS417_01060: PS417_01060 - ABC transporter permease, at 232,560 to 233,204
_01060
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 230.557 kb on + strand, within PS417_01050 at 230.619 kb on + strand, within PS417_01050 at 230.774 kb on - strand, within PS417_01050 at 230.837 kb on + strand, within PS417_01050 at 231.128 kb on + strand at 231.143 kb on + strand at 231.145 kb on + strand at 231.146 kb on - strand at 231.270 kb on - strand at 231.333 kb on - strand at 231.345 kb on - strand at 231.436 kb on + strand at 231.437 kb on - strand at 231.437 kb on - strand at 231.437 kb on - strand at 231.438 kb on + strand at 231.438 kb on + strand at 231.438 kb on + strand at 231.438 kb on + strand at 231.439 kb on - strand at 231.439 kb on - strand at 231.439 kb on - strand at 231.439 kb on - strand at 231.511 kb on + strand at 231.519 kb on - strand at 231.574 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.577 kb on + strand, within PS417_01055 at 231.578 kb on - strand, within PS417_01055 at 231.578 kb on - strand, within PS417_01055 at 231.992 kb on + strand, within PS417_01055 at 232.082 kb on - strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.166 kb on + strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.167 kb on - strand at 232.168 kb on + strand at 232.168 kb on + strand at 232.168 kb on + strand at 232.169 kb on - strand at 232.244 kb on - strand at 232.284 kb on + strand at 232.284 kb on + strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.285 kb on - strand at 232.302 kb on + strand at 232.313 kb on + strand at 232.313 kb on + strand at 232.314 kb on - strand at 232.314 kb on - strand at 232.315 kb on + strand at 232.315 kb on + strand at 232.316 kb on - strand at 232.316 kb on - strand at 232.321 kb on + strand at 232.321 kb on + strand at 232.349 kb on + strand at 232.349 kb on + strand at 232.350 kb on - strand at 232.350 kb on - strand at 232.557 kb on + strand at 232.558 kb on - strand at 232.558 kb on - strand at 232.955 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.075 kb on - strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.078 kb on + strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060 at 233.079 kb on - strand, within PS417_01060
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 230,557 + PS417_01050 0.73 -1.7 230,619 + PS417_01050 0.75 +0.8 230,774 - PS417_01050 0.80 +0.7 230,837 + PS417_01050 0.82 -0.2 231,128 + -0.1 231,143 + -0.4 231,145 + +0.2 231,146 - -0.7 231,270 - -2.7 231,333 - -1.8 231,345 - -1.2 231,436 + -1.7 231,437 - -2.6 231,437 - -0.8 231,437 - +0.0 231,438 + +0.6 231,438 + -0.2 231,438 + +0.1 231,438 + +0.6 231,439 - -0.3 231,439 - +0.9 231,439 - +1.3 231,439 - -0.3 231,511 + +0.3 231,519 - +0.6 231,574 + PS417_01055 0.10 -0.3 231,577 + PS417_01055 0.11 +0.3 231,577 + PS417_01055 0.11 -0.3 231,577 + PS417_01055 0.11 -0.0 231,578 - PS417_01055 0.11 -1.2 231,578 - PS417_01055 0.11 -0.4 231,992 + PS417_01055 0.77 +0.1 232,082 - +0.6 232,166 + +0.7 232,166 + +0.3 232,166 + -0.3 232,166 + -0.1 232,167 - -0.3 232,167 - -1.2 232,167 - -1.8 232,167 - +0.0 232,167 - -0.9 232,168 + -0.1 232,168 + +0.1 232,168 + -2.7 232,169 - -0.2 232,244 - +1.1 232,284 + +0.4 232,284 + +0.4 232,285 - +0.2 232,285 - +0.1 232,285 - -0.5 232,302 + -0.0 232,313 + +0.0 232,313 + -0.5 232,314 - +0.2 232,314 - +0.2 232,315 + +0.3 232,315 + -1.9 232,316 - +0.2 232,316 - -0.8 232,321 + -0.9 232,321 + +0.2 232,349 + -2.2 232,349 + -1.0 232,350 - -3.3 232,350 - +0.2 232,557 + -0.7 232,558 - +1.3 232,558 - -0.5 232,955 - PS417_01060 0.61 -0.5 233,075 - PS417_01060 0.80 -0.8 233,075 - PS417_01060 0.80 -2.5 233,075 - PS417_01060 0.80 +0.0 233,075 - PS417_01060 0.80 +0.8 233,078 + PS417_01060 0.80 -1.0 233,078 + PS417_01060 0.80 +0.2 233,078 + PS417_01060 0.80 +0.1 233,079 - PS417_01060 0.80 -0.5 233,079 - PS417_01060 0.80 -0.3
Or see this region's nucleotide sequence