Strain Fitness in Pseudomonas simiae WCS417 around PS417_08340

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,824,020	+		PS417_08330	0.12	-0.4
1,824,020	+		PS417_08330	0.12	-0.3
1,824,021	-		PS417_08330	0.13	-0.4
1,824,119	-		PS417_08330	0.40	+0.8
1,824,291	+		PS417_08330	0.87	+0.0
1,824,295	+		PS417_08330	0.88	+0.5
1,824,295	+		PS417_08330	0.88	-0.2
1,824,380	+				+0.2
1,824,380	+				+0.4
1,824,380	+				-0.6
1,824,381	-				-0.3
1,824,428	+				+0.9
1,824,509	+				-0.3
1,824,509	+				-1.3
1,824,547	-				+0.0
1,824,551	+				-0.0
1,824,552	-				+0.2
1,824,552	-				+0.2
1,824,618	+		PS417_08335	0.27	-1.5
1,824,618	+				-0.3
1,824,619	-		PS417_08335	0.28	-0.7
1,824,636	-		PS417_08335	0.34	+0.9
1,824,718	-		PS417_08335	0.62	-1.3
1,824,857	-				+0.0
1,824,891	+				-0.1
1,824,892	-				-0.9
1,824,892	-				+0.3
1,824,892	-				-0.2
1,824,892	-				+0.7
1,824,937	-				+0.3
1,825,001	+				+0.6
1,825,006	-				+1.0
1,825,042	+				+0.1
1,825,042	+				+0.5
1,825,043	-				+0.3
1,825,043	-				+0.4
1,825,043	-				-0.3
1,825,055	+				-0.2
1,825,086	+				-0.4
1,825,087	-				+0.1
1,825,091	-				+2.1
1,825,226	+				-1.0
1,825,231	-				+0.6
1,825,283	+				-0.5
1,825,284	-				-0.9
1,825,284	-				-1.1
1,825,284	-				+0.1
1,825,287	+				-0.3
1,825,287	+				-0.2
1,825,319	+		PS417_08340	0.10	+1.1
1,825,327	+		PS417_08340	0.10	-1.7
1,825,327	+		PS417_08340	0.10	+0.6
1,825,328	-		PS417_08340	0.10	-0.8
1,825,328	-		PS417_08340	0.10	+1.0
1,825,328	-				+0.7
1,825,333	+		PS417_08340	0.10	+0.3
1,825,334	-		PS417_08340	0.10	+0.7
1,825,400	-		PS417_08340	0.12	+0.4
1,825,418	-		PS417_08340	0.12	+0.0
1,825,418	-		PS417_08340	0.12	+0.4
1,825,444	+		PS417_08340	0.13	+0.7
1,825,444	+		PS417_08340	0.13	+0.4
1,825,517	-		PS417_08340	0.14	+0.7
1,825,594	+		PS417_08340	0.16	-0.1
1,825,661	-		PS417_08340	0.17	+0.2
1,825,661	-		PS417_08340	0.17	+1.7
1,825,841	-		PS417_08340	0.21	+1.0
1,825,915	+				-0.9
1,826,068	+		PS417_08340	0.26	-0.3
1,826,074	+		PS417_08340	0.26	-0.4
1,826,074	+		PS417_08340	0.26	+0.1
1,826,097	-		PS417_08340	0.27	-0.3
1,826,100	+		PS417_08340	0.27	+0.4
1,826,101	-		PS417_08340	0.27	-0.0
1,826,132	-		PS417_08340	0.27	+0.2
1,826,149	+		PS417_08340	0.28	-0.3
1,826,212	+		PS417_08340	0.29	+0.1
1,826,265	+		PS417_08340	0.30	-2.3
1,826,292	+		PS417_08340	0.31	-0.3
1,826,292	+		PS417_08340	0.31	+0.3
1,826,293	-		PS417_08340	0.31	-0.1
1,826,842	+		PS417_08340	0.42	+2.3
1,826,874	-		PS417_08340	0.43	+1.1
1,826,874	-		PS417_08340	0.43	+0.5
1,826,905	+		PS417_08340	0.44	+1.6
1,826,906	-		PS417_08340	0.44	+0.1
1,826,906	-		PS417_08340	0.44	-0.4
1,826,911	+		PS417_08340	0.44	-0.5
1,827,031	+		PS417_08340	0.46	+1.4
1,827,031	+		PS417_08340	0.46	-0.0
1,827,031	+		PS417_08340	0.46	+0.6
1,827,032	-		PS417_08340	0.46	+0.5
1,827,038	-		PS417_08340	0.46	-1.9
1,827,148	+		PS417_08340	0.49	+1.1
1,827,157	+		PS417_08340	0.49	-0.9
1,827,157	+		PS417_08340	0.49	+0.4
1,827,163	+		PS417_08340	0.49	-0.0
1,827,170	+		PS417_08340	0.49	-0.8
1,827,283	+		PS417_08340	0.52	+0.1
1,827,727	+		PS417_08340	0.61	-0.0
1,827,733	+		PS417_08340	0.61	+0.0
1,827,799	+		PS417_08340	0.63	+0.9
1,828,577	+		PS417_08340	0.79	+1.0
1,828,577	+		PS417_08340	0.79	+0.0
1,828,578	-		PS417_08340	0.79	+1.7
1,828,598	+		PS417_08340	0.80	-0.1
1,828,599	-		PS417_08340	0.80	+0.5
1,828,708	+		PS417_08340	0.82	-1.7
1,828,759	+		PS417_08340	0.83	-1.1
1,828,759	+		PS417_08340	0.83	+0.6
1,828,760	-		PS417_08340	0.83	+0.2
1,828,760	-		PS417_08340	0.83	-0.7
1,828,760	-		PS417_08340	0.83	+0.1
1,828,858	+		PS417_08340	0.85	+0.0
1,828,858	+		PS417_08340	0.85	+0.8
1,828,858	+		PS417_08340	0.85	-0.1
1,828,858	+		PS417_08340	0.85	+0.6
1,828,859	-		PS417_08340	0.85	+0.4
1,828,859	-		PS417_08340	0.85	-0.3
1,828,906	+		PS417_08340	0.86	-0.8
1,828,907	-		PS417_08340	0.86	-0.5
1,828,936	+		PS417_08340	0.87	+0.3
1,828,937	-		PS417_08340	0.87	-0.0
1,829,089	+		PS417_08340	0.90	-0.1
1,829,098	+				+0.8
1,829,098	+				-0.5
1,829,099	-				-1.1
1,829,099	-				+0.3
1,829,135	-				+1.0
1,829,268	-				+0.3
1,829,410	-				-0.2
1,829,764	+				+1.7
1,829,765	-				+1.2
1,830,528	+		PS417_08345	0.52	-0.0
1,830,528	+		PS417_08345	0.52	+0.4
1,830,528	+		PS417_08345	0.52	+0.8