Strain Fitness in Pseudomonas simiae WCS417 around PS417_05880

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,303,848	+		PS417_05870	0.69	-0.2
1,304,055	+				-2.8
1,304,098	+				-0.2
1,304,098	+				-0.1
1,304,098	+				-0.5
1,304,098	+				-0.8
1,304,098	+				-0.0
1,304,098	+				-0.2
1,304,099	-				+0.4
1,304,103	+				-0.1
1,304,103	+				-0.0
1,304,104	-				-0.2
1,304,233	+				-0.8
1,304,233	+				-0.1
1,304,234	-				-0.2
1,304,307	+		PS417_05875	0.24	+1.0
1,304,308	-		PS417_05875	0.24	+0.3
1,304,308	-		PS417_05875	0.24	+0.2
1,304,362	+		PS417_05875	0.35	+0.1
1,304,363	-		PS417_05875	0.36	-0.2
1,304,363	-		PS417_05875	0.36	+0.2
1,304,363	-		PS417_05875	0.36	+0.6
1,304,546	+		PS417_05875	0.75	+0.2
1,304,556	+		PS417_05875	0.77	-0.0
1,304,556	+		PS417_05875	0.77	-0.8
1,304,556	+		PS417_05875	0.77	+0.8
1,304,556	+		PS417_05875	0.77	-0.4
1,304,557	-		PS417_05875	0.77	-1.2
1,304,749	+				-1.6
1,304,749	+				+0.0
1,304,792	-				-2.0
1,305,142	+		PS417_05880	0.28	-0.5
1,305,143	-		PS417_05880	0.28	+0.0
1,305,143	-		PS417_05880	0.28	-2.5
1,305,380	-		PS417_05880	0.46	+0.2
1,305,385	+		PS417_05880	0.46	+1.0
1,305,385	+		PS417_05880	0.46	-2.6
1,305,385	+		PS417_05880	0.46	-1.7
1,305,386	-		PS417_05880	0.46	-0.6
1,305,386	-		PS417_05880	0.46	-0.9
1,305,386	-		PS417_05880	0.46	-1.0
1,305,573	+		PS417_05880	0.60	-0.0
1,305,667	+		PS417_05880	0.67	-0.8
1,305,781	+		PS417_05880	0.76	-1.2
1,305,782	-		PS417_05880	0.76	-1.3
1,305,973	+				-0.7
1,305,991	+				-1.4
1,306,226	+				-1.6
1,306,226	+				-0.3
1,306,281	-				-1.9
1,306,333	+				-1.2
1,306,355	+				+0.2
1,306,355	+				-0.8
1,306,356	-				+0.4
1,306,406	+				+0.1
1,306,451	+				-1.6
1,306,452	-				+1.9
1,306,452	-				-0.7
1,306,479	+				+0.4
1,306,507	-				-0.9
1,306,620	+		PS417_05885	0.12	-1.1
1,306,621	-		PS417_05885	0.12	+1.0
1,306,621	-		PS417_05885	0.12	-0.4
1,306,621	-		PS417_05885	0.12	-1.8
1,306,980	+		PS417_05885	0.31	-0.6
1,306,980	+		PS417_05885	0.31	+1.6
1,306,980	+		PS417_05885	0.31	+0.2