Experiment: Temperature shift 30_to_4; with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4849 and PP_4850 are separated by 51 nucleotides PP_4850 and PP_4851 are separated by 9 nucleotides PP_4851 and PP_4852 are separated by 30 nucleotides
PP_4849: PP_4849 - putative DnaK protein, at 5,516,190 to 5,517,461
_4849
PP_4850: PP_4850 - conserved membrane protein of unknown function, at 5,517,513 to 5,518,580
_4850
PP_4851: PP_4851 - Phosphate starvation-inducible protein, PSIF, at 5,518,590 to 5,518,910
_4851
PP_4852: PP_4852 - Transcriptional regulator, AraC family, at 5,518,941 to 5,519,729
_4852
Position (kb)
5517
5518
5519 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5516.676 kb on + strand, within PP_4849 at 5516.676 kb on + strand, within PP_4849 at 5516.677 kb on - strand, within PP_4849 at 5516.677 kb on - strand, within PP_4849 at 5516.703 kb on + strand, within PP_4849 at 5516.734 kb on + strand, within PP_4849 at 5516.910 kb on + strand, within PP_4849 at 5516.911 kb on - strand, within PP_4849 at 5516.952 kb on + strand, within PP_4849 at 5516.952 kb on + strand, within PP_4849 at 5516.953 kb on - strand, within PP_4849 at 5516.953 kb on - strand, within PP_4849 at 5516.995 kb on - strand, within PP_4849 at 5516.995 kb on - strand, within PP_4849 at 5517.034 kb on - strand, within PP_4849 at 5517.305 kb on + strand, within PP_4849 at 5517.398 kb on + strand at 5517.398 kb on + strand at 5517.399 kb on - strand at 5517.506 kb on + strand at 5517.506 kb on + strand at 5517.506 kb on + strand at 5517.506 kb on + strand at 5517.507 kb on - strand at 5517.507 kb on - strand at 5517.507 kb on - strand at 5517.507 kb on - strand at 5517.550 kb on + strand at 5517.551 kb on - strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.556 kb on + strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.557 kb on - strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.559 kb on + strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.560 kb on - strand at 5517.606 kb on + strand at 5517.607 kb on - strand at 5517.679 kb on + strand, within PP_4850 at 5517.679 kb on + strand, within PP_4850 at 5517.849 kb on + strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5517.850 kb on - strand, within PP_4850 at 5518.171 kb on + strand, within PP_4850 at 5518.171 kb on + strand, within PP_4850 at 5518.520 kb on + strand at 5518.520 kb on + strand at 5518.521 kb on - strand at 5518.580 kb on + strand at 5518.928 kb on + strand at 5518.928 kb on + strand at 5518.983 kb on - strand at 5519.182 kb on - strand, within PP_4852 at 5519.322 kb on + strand, within PP_4852 at 5519.328 kb on + strand at 5519.467 kb on + strand, within PP_4852 at 5519.467 kb on + strand, within PP_4852 at 5519.468 kb on - strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.471 kb on + strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.472 kb on - strand, within PP_4852 at 5519.480 kb on - strand, within PP_4852 at 5519.500 kb on + strand, within PP_4852 at 5519.500 kb on + strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852 at 5519.501 kb on - strand, within PP_4852
Per-strain Table
Position Strand Gene LocusTag Fraction Temperature shift 30_to_4; with MOPS remove 5,516,676 + PP_4849 0.38 +1.1 5,516,676 + PP_4849 0.38 +0.5 5,516,677 - PP_4849 0.38 +0.5 5,516,677 - PP_4849 0.38 -0.1 5,516,703 + PP_4849 0.40 +0.8 5,516,734 + PP_4849 0.43 -0.2 5,516,910 + PP_4849 0.57 -0.1 5,516,911 - PP_4849 0.57 +0.1 5,516,952 + PP_4849 0.60 -0.8 5,516,952 + PP_4849 0.60 -0.6 5,516,953 - PP_4849 0.60 +1.7 5,516,953 - PP_4849 0.60 -0.4 5,516,995 - PP_4849 0.63 +0.3 5,516,995 - PP_4849 0.63 -0.0 5,517,034 - PP_4849 0.66 +0.2 5,517,305 + PP_4849 0.88 -1.2 5,517,398 + -1.4 5,517,398 + -0.9 5,517,399 - -0.2 5,517,506 + -0.3 5,517,506 + +1.4 5,517,506 + -0.9 5,517,506 + -0.6 5,517,507 - -0.9 5,517,507 - -0.1 5,517,507 - -0.1 5,517,507 - +0.6 5,517,550 + -0.1 5,517,551 - -0.3 5,517,556 + -0.9 5,517,556 + -0.6 5,517,556 + +0.9 5,517,556 + +0.5 5,517,556 + +0.3 5,517,556 + -0.0 5,517,557 - -0.1 5,517,557 - -1.5 5,517,557 - -0.8 5,517,557 - -1.5 5,517,557 - +0.1 5,517,557 - -0.4 5,517,557 - -0.2 5,517,557 - +0.1 5,517,557 - -0.0 5,517,557 - -0.8 5,517,559 + +0.1 5,517,559 + -0.2 5,517,559 + +0.1 5,517,559 + +1.1 5,517,559 + -0.1 5,517,559 + -0.0 5,517,559 + -0.3 5,517,559 + -3.0 5,517,559 + +0.3 5,517,560 - -0.2 5,517,560 - +0.4 5,517,560 - -0.3 5,517,560 - +0.9 5,517,560 - -0.7 5,517,560 - +1.7 5,517,560 - -1.1 5,517,560 - +1.6 5,517,606 + +0.6 5,517,607 - -0.3 5,517,679 + PP_4850 0.16 -0.7 5,517,679 + PP_4850 0.16 -0.9 5,517,849 + PP_4850 0.31 -1.3 5,517,850 - PP_4850 0.32 -2.0 5,517,850 - PP_4850 0.32 -0.2 5,517,850 - PP_4850 0.32 -2.2 5,518,171 + PP_4850 0.62 -1.6 5,518,171 + PP_4850 0.62 -0.2 5,518,520 + +0.1 5,518,520 + -1.2 5,518,521 - -0.8 5,518,580 + -1.4 5,518,928 + +3.5 5,518,928 + -0.1 5,518,983 - -0.2 5,519,182 - PP_4852 0.31 -0.4 5,519,322 + PP_4852 0.48 -0.8 5,519,328 + +0.6 5,519,467 + PP_4852 0.67 -1.1 5,519,467 + PP_4852 0.67 -1.8 5,519,468 - PP_4852 0.67 -0.3 5,519,471 + PP_4852 0.67 +1.3 5,519,471 + PP_4852 0.67 +0.6 5,519,471 + PP_4852 0.67 -0.2 5,519,471 + PP_4852 0.67 +0.1 5,519,472 - PP_4852 0.67 +0.2 5,519,472 - PP_4852 0.67 +0.2 5,519,472 - PP_4852 0.67 -1.8 5,519,472 - PP_4852 0.67 -0.6 5,519,472 - PP_4852 0.67 -0.3 5,519,472 - PP_4852 0.67 +1.0 5,519,472 - PP_4852 0.67 +0.4 5,519,472 - PP_4852 0.67 +0.7 5,519,480 - PP_4852 0.68 +1.1 5,519,500 + PP_4852 0.71 -0.4 5,519,500 + PP_4852 0.71 +0.6 5,519,501 - PP_4852 0.71 -0.4 5,519,501 - PP_4852 0.71 +0.1 5,519,501 - PP_4852 0.71 -1.4 5,519,501 - PP_4852 0.71 +0.3 5,519,501 - PP_4852 0.71 +0.4 5,519,501 - PP_4852 0.71 +0.8
Or see this region's nucleotide sequence