Strain Fitness in Pseudomonas putida KT2440 around PP_4850

Experiment: Temperature shift 30_to_4; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4849 and PP_4850 are separated by 51 nucleotidesPP_4850 and PP_4851 are separated by 9 nucleotidesPP_4851 and PP_4852 are separated by 30 nucleotides PP_4849: PP_4849 - putative DnaK protein, at 5,516,190 to 5,517,461 _4849 PP_4850: PP_4850 - conserved membrane protein of unknown function, at 5,517,513 to 5,518,580 _4850 PP_4851: PP_4851 - Phosphate starvation-inducible protein, PSIF, at 5,518,590 to 5,518,910 _4851 PP_4852: PP_4852 - Transcriptional regulator, AraC family, at 5,518,941 to 5,519,729 _4852 Position (kb) 5517 5518 5519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5516.676 kb on + strand, within PP_4849at 5516.676 kb on + strand, within PP_4849at 5516.677 kb on - strand, within PP_4849at 5516.677 kb on - strand, within PP_4849at 5516.703 kb on + strand, within PP_4849at 5516.734 kb on + strand, within PP_4849at 5516.910 kb on + strand, within PP_4849at 5516.911 kb on - strand, within PP_4849at 5516.952 kb on + strand, within PP_4849at 5516.952 kb on + strand, within PP_4849at 5516.953 kb on - strand, within PP_4849at 5516.953 kb on - strand, within PP_4849at 5516.995 kb on - strand, within PP_4849at 5516.995 kb on - strand, within PP_4849at 5517.034 kb on - strand, within PP_4849at 5517.305 kb on + strand, within PP_4849at 5517.398 kb on + strandat 5517.398 kb on + strandat 5517.399 kb on - strandat 5517.506 kb on + strandat 5517.506 kb on + strandat 5517.506 kb on + strandat 5517.506 kb on + strandat 5517.507 kb on - strandat 5517.507 kb on - strandat 5517.507 kb on - strandat 5517.507 kb on - strandat 5517.550 kb on + strandat 5517.551 kb on - strandat 5517.556 kb on + strandat 5517.556 kb on + strandat 5517.556 kb on + strandat 5517.556 kb on + strandat 5517.556 kb on + strandat 5517.556 kb on + strandat 5517.557 kb on - strandat 5517.557 kb on - strandat 5517.557 kb on - strandat 5517.557 kb on - strandat 5517.557 kb on - strandat 5517.557 kb on - strandat 5517.557 kb on - strandat 5517.557 kb on - strandat 5517.557 kb on - strandat 5517.557 kb on - strandat 5517.559 kb on + strandat 5517.559 kb on + strandat 5517.559 kb on + strandat 5517.559 kb on + strandat 5517.559 kb on + strandat 5517.559 kb on + strandat 5517.559 kb on + strandat 5517.559 kb on + strandat 5517.559 kb on + strandat 5517.560 kb on - strandat 5517.560 kb on - strandat 5517.560 kb on - strandat 5517.560 kb on - strandat 5517.560 kb on - strandat 5517.560 kb on - strandat 5517.560 kb on - strandat 5517.560 kb on - strandat 5517.606 kb on + strandat 5517.607 kb on - strandat 5517.679 kb on + strand, within PP_4850at 5517.679 kb on + strand, within PP_4850at 5517.849 kb on + strand, within PP_4850at 5517.850 kb on - strand, within PP_4850at 5517.850 kb on - strand, within PP_4850at 5517.850 kb on - strand, within PP_4850at 5518.171 kb on + strand, within PP_4850at 5518.171 kb on + strand, within PP_4850at 5518.520 kb on + strandat 5518.520 kb on + strandat 5518.521 kb on - strandat 5518.580 kb on + strandat 5518.928 kb on + strandat 5518.928 kb on + strandat 5518.983 kb on - strandat 5519.182 kb on - strand, within PP_4852at 5519.322 kb on + strand, within PP_4852at 5519.328 kb on + strandat 5519.467 kb on + strand, within PP_4852at 5519.467 kb on + strand, within PP_4852at 5519.468 kb on - strand, within PP_4852at 5519.471 kb on + strand, within PP_4852at 5519.471 kb on + strand, within PP_4852at 5519.471 kb on + strand, within PP_4852at 5519.471 kb on + strand, within PP_4852at 5519.472 kb on - strand, within PP_4852at 5519.472 kb on - strand, within PP_4852at 5519.472 kb on - strand, within PP_4852at 5519.472 kb on - strand, within PP_4852at 5519.472 kb on - strand, within PP_4852at 5519.472 kb on - strand, within PP_4852at 5519.472 kb on - strand, within PP_4852at 5519.472 kb on - strand, within PP_4852at 5519.480 kb on - strand, within PP_4852at 5519.500 kb on + strand, within PP_4852at 5519.500 kb on + strand, within PP_4852at 5519.501 kb on - strand, within PP_4852at 5519.501 kb on - strand, within PP_4852at 5519.501 kb on - strand, within PP_4852at 5519.501 kb on - strand, within PP_4852at 5519.501 kb on - strand, within PP_4852at 5519.501 kb on - strand, within PP_4852

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Per-strain Table

Position Strand Gene LocusTag Fraction Temperature shift 30_to_4; with MOPS
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5,516,676 + PP_4849 0.38 +1.1
5,516,676 + PP_4849 0.38 +0.5
5,516,677 - PP_4849 0.38 +0.5
5,516,677 - PP_4849 0.38 -0.1
5,516,703 + PP_4849 0.40 +0.8
5,516,734 + PP_4849 0.43 -0.2
5,516,910 + PP_4849 0.57 -0.1
5,516,911 - PP_4849 0.57 +0.1
5,516,952 + PP_4849 0.60 -0.8
5,516,952 + PP_4849 0.60 -0.6
5,516,953 - PP_4849 0.60 +1.7
5,516,953 - PP_4849 0.60 -0.4
5,516,995 - PP_4849 0.63 +0.3
5,516,995 - PP_4849 0.63 -0.0
5,517,034 - PP_4849 0.66 +0.2
5,517,305 + PP_4849 0.88 -1.2
5,517,398 + -1.4
5,517,398 + -0.9
5,517,399 - -0.2
5,517,506 + -0.3
5,517,506 + +1.4
5,517,506 + -0.9
5,517,506 + -0.6
5,517,507 - -0.9
5,517,507 - -0.1
5,517,507 - -0.1
5,517,507 - +0.6
5,517,550 + -0.1
5,517,551 - -0.3
5,517,556 + -0.9
5,517,556 + -0.6
5,517,556 + +0.9
5,517,556 + +0.5
5,517,556 + +0.3
5,517,556 + -0.0
5,517,557 - -0.1
5,517,557 - -1.5
5,517,557 - -0.8
5,517,557 - -1.5
5,517,557 - +0.1
5,517,557 - -0.4
5,517,557 - -0.2
5,517,557 - +0.1
5,517,557 - -0.0
5,517,557 - -0.8
5,517,559 + +0.1
5,517,559 + -0.2
5,517,559 + +0.1
5,517,559 + +1.1
5,517,559 + -0.1
5,517,559 + -0.0
5,517,559 + -0.3
5,517,559 + -3.0
5,517,559 + +0.3
5,517,560 - -0.2
5,517,560 - +0.4
5,517,560 - -0.3
5,517,560 - +0.9
5,517,560 - -0.7
5,517,560 - +1.7
5,517,560 - -1.1
5,517,560 - +1.6
5,517,606 + +0.6
5,517,607 - -0.3
5,517,679 + PP_4850 0.16 -0.7
5,517,679 + PP_4850 0.16 -0.9
5,517,849 + PP_4850 0.31 -1.3
5,517,850 - PP_4850 0.32 -2.0
5,517,850 - PP_4850 0.32 -0.2
5,517,850 - PP_4850 0.32 -2.2
5,518,171 + PP_4850 0.62 -1.6
5,518,171 + PP_4850 0.62 -0.2
5,518,520 + +0.1
5,518,520 + -1.2
5,518,521 - -0.8
5,518,580 + -1.4
5,518,928 + +3.5
5,518,928 + -0.1
5,518,983 - -0.2
5,519,182 - PP_4852 0.31 -0.4
5,519,322 + PP_4852 0.48 -0.8
5,519,328 + +0.6
5,519,467 + PP_4852 0.67 -1.1
5,519,467 + PP_4852 0.67 -1.8
5,519,468 - PP_4852 0.67 -0.3
5,519,471 + PP_4852 0.67 +1.3
5,519,471 + PP_4852 0.67 +0.6
5,519,471 + PP_4852 0.67 -0.2
5,519,471 + PP_4852 0.67 +0.1
5,519,472 - PP_4852 0.67 +0.2
5,519,472 - PP_4852 0.67 +0.2
5,519,472 - PP_4852 0.67 -1.8
5,519,472 - PP_4852 0.67 -0.6
5,519,472 - PP_4852 0.67 -0.3
5,519,472 - PP_4852 0.67 +1.0
5,519,472 - PP_4852 0.67 +0.4
5,519,472 - PP_4852 0.67 +0.7
5,519,480 - PP_4852 0.68 +1.1
5,519,500 + PP_4852 0.71 -0.4
5,519,500 + PP_4852 0.71 +0.6
5,519,501 - PP_4852 0.71 -0.4
5,519,501 - PP_4852 0.71 +0.1
5,519,501 - PP_4852 0.71 -1.4
5,519,501 - PP_4852 0.71 +0.3
5,519,501 - PP_4852 0.71 +0.4
5,519,501 - PP_4852 0.71 +0.8

Or see this region's nucleotide sequence