Strain Fitness in Pseudomonas putida KT2440 around PP_3150

Experiment: Temperature shift 30_to_4; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3149 and PP_3150 overlap by 4 nucleotidesPP_3150 and PP_3151 are separated by 37 nucleotides PP_3149: PP_3149 - Transcriptional regulator, AraC family, at 3,566,398 to 3,567,447 _3149 PP_3150: PP_3150 - conserved protein of unknown function, at 3,567,444 to 3,569,441 _3150 PP_3151: PP_3151 - NAD+-dependent succinate semialdehyde dehydrogenase, at 3,569,479 to 3,570,864 _3151 Position (kb) 3567 3568 3569 3570Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3566.467 kb on - strandat 3566.467 kb on - strandat 3566.467 kb on - strandat 3566.496 kb on - strandat 3566.496 kb on - strandat 3566.496 kb on - strandat 3566.707 kb on + strand, within PP_3149at 3566.708 kb on - strand, within PP_3149at 3566.708 kb on - strand, within PP_3149at 3566.800 kb on + strand, within PP_3149at 3566.801 kb on - strand, within PP_3149at 3566.801 kb on - strand, within PP_3149at 3566.827 kb on - strand, within PP_3149at 3566.849 kb on - strand, within PP_3149at 3566.849 kb on - strand, within PP_3149at 3566.849 kb on - strand, within PP_3149at 3566.849 kb on - strand, within PP_3149at 3566.849 kb on - strand, within PP_3149at 3567.249 kb on + strand, within PP_3149at 3567.250 kb on - strand, within PP_3149at 3567.392 kb on - strandat 3567.498 kb on + strandat 3567.538 kb on - strandat 3567.763 kb on + strand, within PP_3150at 3567.764 kb on - strand, within PP_3150at 3567.852 kb on + strand, within PP_3150at 3567.853 kb on - strandat 3567.945 kb on + strand, within PP_3150at 3568.179 kb on + strand, within PP_3150at 3568.180 kb on - strand, within PP_3150at 3568.180 kb on - strand, within PP_3150at 3568.180 kb on - strand, within PP_3150at 3568.367 kb on + strand, within PP_3150at 3568.549 kb on - strand, within PP_3150at 3568.549 kb on - strand, within PP_3150at 3568.549 kb on - strand, within PP_3150at 3568.549 kb on - strand, within PP_3150at 3568.683 kb on - strand, within PP_3150at 3568.864 kb on - strand, within PP_3150at 3569.052 kb on + strand, within PP_3150at 3569.169 kb on + strand, within PP_3150at 3569.343 kb on - strandat 3569.343 kb on - strandat 3569.359 kb on - strandat 3569.359 kb on - strandat 3569.359 kb on - strandat 3569.664 kb on - strand, within PP_3151at 3569.675 kb on + strand, within PP_3151at 3569.675 kb on + strand, within PP_3151at 3569.676 kb on - strand, within PP_3151at 3569.676 kb on - strand, within PP_3151at 3569.676 kb on - strand, within PP_3151at 3569.676 kb on - strand, within PP_3151at 3569.676 kb on - strand, within PP_3151at 3569.950 kb on - strand, within PP_3151at 3569.951 kb on + strand, within PP_3151at 3569.951 kb on + strand, within PP_3151at 3569.951 kb on + strand, within PP_3151at 3569.951 kb on + strand, within PP_3151at 3569.951 kb on + strand, within PP_3151at 3569.951 kb on + strand, within PP_3151at 3569.951 kb on + strand, within PP_3151at 3569.951 kb on + strand, within PP_3151at 3569.951 kb on + strand, within PP_3151at 3569.952 kb on - strand, within PP_3151at 3569.952 kb on - strand, within PP_3151at 3569.952 kb on - strand, within PP_3151at 3569.952 kb on - strand, within PP_3151at 3570.087 kb on - strand, within PP_3151at 3570.359 kb on + strand, within PP_3151at 3570.374 kb on - strand, within PP_3151at 3570.398 kb on + strand, within PP_3151at 3570.399 kb on - strand, within PP_3151at 3570.399 kb on - strand, within PP_3151

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Per-strain Table

Position Strand Gene LocusTag Fraction Temperature shift 30_to_4; with MOPS
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3,566,467 - -0.0
3,566,467 - -0.7
3,566,467 - -0.2
3,566,496 - -0.4
3,566,496 - -0.3
3,566,496 - +0.4
3,566,707 + PP_3149 0.29 -0.3
3,566,708 - PP_3149 0.30 +0.1
3,566,708 - PP_3149 0.30 -0.6
3,566,800 + PP_3149 0.38 -0.2
3,566,801 - PP_3149 0.38 -0.2
3,566,801 - PP_3149 0.38 +2.0
3,566,827 - PP_3149 0.41 +0.3
3,566,849 - PP_3149 0.43 -0.4
3,566,849 - PP_3149 0.43 +0.8
3,566,849 - PP_3149 0.43 +0.0
3,566,849 - PP_3149 0.43 -0.0
3,566,849 - PP_3149 0.43 +0.0
3,567,249 + PP_3149 0.81 -0.2
3,567,250 - PP_3149 0.81 +0.0
3,567,392 - +1.0
3,567,498 + -1.5
3,567,538 - +1.9
3,567,763 + PP_3150 0.16 -0.7
3,567,764 - PP_3150 0.16 -3.1
3,567,852 + PP_3150 0.20 -0.8
3,567,853 - -1.3
3,567,945 + PP_3150 0.25 -0.7
3,568,179 + PP_3150 0.37 -0.9
3,568,180 - PP_3150 0.37 -1.0
3,568,180 - PP_3150 0.37 -0.9
3,568,180 - PP_3150 0.37 -0.6
3,568,367 + PP_3150 0.46 -3.2
3,568,549 - PP_3150 0.55 +0.0
3,568,549 - PP_3150 0.55 -0.5
3,568,549 - PP_3150 0.55 -1.6
3,568,549 - PP_3150 0.55 -0.7
3,568,683 - PP_3150 0.62 -0.5
3,568,864 - PP_3150 0.71 -2.0
3,569,052 + PP_3150 0.80 -1.2
3,569,169 + PP_3150 0.86 -0.6
3,569,343 - -1.8
3,569,343 - -0.2
3,569,359 - -1.3
3,569,359 - -1.2
3,569,359 - -3.1
3,569,664 - PP_3151 0.13 -0.6
3,569,675 + PP_3151 0.14 +0.1
3,569,675 + PP_3151 0.14 -0.0
3,569,676 - PP_3151 0.14 -1.6
3,569,676 - PP_3151 0.14 +0.8
3,569,676 - PP_3151 0.14 +0.6
3,569,676 - PP_3151 0.14 +1.5
3,569,676 - PP_3151 0.14 -0.4
3,569,950 - PP_3151 0.34 -0.1
3,569,951 + PP_3151 0.34 -0.0
3,569,951 + PP_3151 0.34 +0.0
3,569,951 + PP_3151 0.34 +0.4
3,569,951 + PP_3151 0.34 +0.1
3,569,951 + PP_3151 0.34 +0.4
3,569,951 + PP_3151 0.34 -0.1
3,569,951 + PP_3151 0.34 -0.5
3,569,951 + PP_3151 0.34 +0.1
3,569,951 + PP_3151 0.34 +0.7
3,569,952 - PP_3151 0.34 -0.8
3,569,952 - PP_3151 0.34 -0.6
3,569,952 - PP_3151 0.34 +0.5
3,569,952 - PP_3151 0.34 -0.1
3,570,087 - PP_3151 0.44 -0.2
3,570,359 + PP_3151 0.63 -2.0
3,570,374 - PP_3151 0.65 -1.0
3,570,398 + PP_3151 0.66 +0.1
3,570,399 - PP_3151 0.66 -1.1
3,570,399 - PP_3151 0.66 +0.6

Or see this region's nucleotide sequence