Strain Fitness in Pseudomonas putida KT2440 around PP_3695

Experiment: Temperature shift 30_to_4; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3694 and PP_3695 overlap by 43 nucleotidesPP_3695 and PP_3696 are separated by 6 nucleotides PP_3694: PP_3694 - conserved protein of unknown function, at 4,211,656 to 4,212,615 _3694 PP_3695: PP_3695 - conserved protein of unknown function, at 4,212,573 to 4,213,724 _3695 PP_3696: PP_3696 - conserved protein of unknown function, at 4,213,731 to 4,214,951 _3696 Position (kb) 4212 4213 4214Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4211.620 kb on + strandat 4211.620 kb on + strandat 4211.621 kb on - strandat 4211.629 kb on - strandat 4211.629 kb on - strandat 4211.637 kb on + strandat 4211.637 kb on + strandat 4211.645 kb on + strandat 4211.678 kb on - strandat 4211.678 kb on - strandat 4211.678 kb on - strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.688 kb on - strandat 4211.688 kb on - strandat 4211.748 kb on + strandat 4211.773 kb on - strand, within PP_3694at 4211.788 kb on - strand, within PP_3694at 4211.788 kb on - strand, within PP_3694at 4211.788 kb on - strand, within PP_3694at 4211.799 kb on + strand, within PP_3694at 4211.800 kb on - strand, within PP_3694at 4211.800 kb on - strand, within PP_3694at 4211.835 kb on + strand, within PP_3694at 4211.836 kb on - strand, within PP_3694at 4211.836 kb on - strand, within PP_3694at 4211.847 kb on - strand, within PP_3694at 4211.857 kb on + strand, within PP_3694at 4211.858 kb on - strand, within PP_3694at 4211.858 kb on - strand, within PP_3694at 4211.908 kb on + strand, within PP_3694at 4211.932 kb on + strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.943 kb on + strand, within PP_3694at 4211.944 kb on - strand, within PP_3694at 4211.958 kb on - strand, within PP_3694at 4212.006 kb on + strand, within PP_3694at 4212.007 kb on - strand, within PP_3694at 4212.110 kb on + strand, within PP_3694at 4212.134 kb on + strand, within PP_3694at 4212.134 kb on + strand, within PP_3694at 4212.144 kb on + strand, within PP_3694at 4212.144 kb on + strand, within PP_3694at 4212.144 kb on + strand, within PP_3694at 4212.158 kb on - strand, within PP_3694at 4212.158 kb on - strand, within PP_3694at 4212.174 kb on + strand, within PP_3694at 4212.175 kb on - strand, within PP_3694at 4212.183 kb on + strand, within PP_3694at 4212.184 kb on - strand, within PP_3694at 4212.187 kb on + strand, within PP_3694at 4212.228 kb on + strand, within PP_3694at 4212.267 kb on + strand, within PP_3694at 4212.267 kb on + strand, within PP_3694at 4212.267 kb on + strand, within PP_3694at 4212.267 kb on + strand, within PP_3694at 4212.268 kb on - strand, within PP_3694at 4212.268 kb on - strand, within PP_3694at 4212.268 kb on - strand, within PP_3694at 4212.268 kb on - strand, within PP_3694at 4212.294 kb on - strand, within PP_3694at 4212.301 kb on + strand, within PP_3694at 4212.302 kb on - strand, within PP_3694at 4212.340 kb on + strand, within PP_3694at 4212.340 kb on + strand, within PP_3694at 4212.341 kb on - strand, within PP_3694at 4212.341 kb on - strand, within PP_3694at 4212.393 kb on - strand, within PP_3694at 4212.393 kb on - strand, within PP_3694at 4212.404 kb on + strand, within PP_3694at 4212.404 kb on + strand, within PP_3694at 4212.404 kb on + strand, within PP_3694at 4212.405 kb on - strand, within PP_3694at 4212.405 kb on - strand, within PP_3694at 4212.405 kb on - strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.467 kb on - strand, within PP_3694at 4212.467 kb on - strand, within PP_3694at 4212.471 kb on - strand, within PP_3694at 4212.561 kb on + strandat 4212.562 kb on - strandat 4212.564 kb on + strandat 4212.565 kb on - strandat 4212.571 kb on + strandat 4212.616 kb on - strandat 4212.703 kb on - strand, within PP_3695at 4212.719 kb on + strand, within PP_3695at 4212.720 kb on - strand, within PP_3695at 4212.720 kb on - strand, within PP_3695at 4212.720 kb on - strand, within PP_3695at 4212.776 kb on + strand, within PP_3695at 4212.785 kb on + strand, within PP_3695at 4212.786 kb on - strand, within PP_3695at 4212.786 kb on - strand, within PP_3695at 4212.786 kb on - strand, within PP_3695at 4212.786 kb on - strand, within PP_3695at 4212.795 kb on + strand, within PP_3695at 4212.840 kb on - strand, within PP_3695at 4212.849 kb on - strand, within PP_3695at 4212.865 kb on + strand, within PP_3695at 4212.927 kb on + strand, within PP_3695at 4213.008 kb on + strand, within PP_3695at 4213.008 kb on + strand, within PP_3695at 4213.008 kb on + strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.009 kb on - strand, within PP_3695at 4213.052 kb on + strand, within PP_3695at 4213.103 kb on + strand, within PP_3695at 4213.104 kb on - strand, within PP_3695at 4213.104 kb on - strand, within PP_3695at 4213.111 kb on + strand, within PP_3695at 4213.159 kb on + strand, within PP_3695at 4213.215 kb on - strand, within PP_3695at 4213.215 kb on - strand, within PP_3695at 4213.218 kb on + strand, within PP_3695at 4213.219 kb on - strand, within PP_3695at 4213.219 kb on - strand, within PP_3695at 4213.272 kb on + strand, within PP_3695at 4213.272 kb on + strand, within PP_3695at 4213.285 kb on - strand, within PP_3695at 4213.319 kb on + strandat 4213.319 kb on + strandat 4213.319 kb on + strand, within PP_3695at 4213.320 kb on - strand, within PP_3695at 4213.402 kb on + strand, within PP_3695at 4213.402 kb on + strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.403 kb on - strand, within PP_3695at 4213.413 kb on + strand, within PP_3695at 4213.413 kb on + strand, within PP_3695at 4213.414 kb on - strand, within PP_3695at 4213.414 kb on - strand, within PP_3695at 4213.424 kb on + strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.425 kb on - strand, within PP_3695at 4213.437 kb on - strand, within PP_3695at 4213.476 kb on + strand, within PP_3695at 4213.485 kb on + strand, within PP_3695at 4213.604 kb on + strand, within PP_3695at 4213.611 kb on - strandat 4213.684 kb on + strandat 4213.697 kb on + strandat 4213.697 kb on + strandat 4213.697 kb on + strandat 4213.697 kb on + strandat 4213.697 kb on + strandat 4213.704 kb on + strandat 4213.704 kb on + strandat 4213.725 kb on - strandat 4213.795 kb on + strandat 4213.824 kb on + strandat 4213.825 kb on - strandat 4213.825 kb on - strandat 4213.910 kb on + strand, within PP_3696at 4214.007 kb on - strand, within PP_3696at 4214.066 kb on + strand, within PP_3696at 4214.066 kb on + strand, within PP_3696at 4214.066 kb on + strand, within PP_3696at 4214.067 kb on - strand, within PP_3696at 4214.074 kb on + strand, within PP_3696at 4214.074 kb on + strand, within PP_3696at 4214.075 kb on - strand, within PP_3696at 4214.075 kb on - strand, within PP_3696at 4214.083 kb on - strandat 4214.196 kb on + strand, within PP_3696at 4214.196 kb on + strand, within PP_3696at 4214.196 kb on + strand, within PP_3696at 4214.196 kb on + strand, within PP_3696at 4214.197 kb on - strand, within PP_3696at 4214.197 kb on - strand, within PP_3696at 4214.216 kb on + strand, within PP_3696at 4214.217 kb on - strand, within PP_3696at 4214.217 kb on - strand, within PP_3696at 4214.231 kb on + strand, within PP_3696at 4214.276 kb on - strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.315 kb on + strand, within PP_3696at 4214.316 kb on - strand, within PP_3696at 4214.316 kb on - strand, within PP_3696at 4214.316 kb on - strand, within PP_3696at 4214.316 kb on - strand, within PP_3696at 4214.374 kb on - strand, within PP_3696at 4214.386 kb on + strand, within PP_3696at 4214.386 kb on + strand, within PP_3696at 4214.387 kb on - strand, within PP_3696at 4214.387 kb on - strand, within PP_3696at 4214.458 kb on - strand, within PP_3696at 4214.458 kb on - strand, within PP_3696at 4214.458 kb on - strand, within PP_3696at 4214.473 kb on + strand, within PP_3696at 4214.473 kb on + strand, within PP_3696at 4214.473 kb on + strand, within PP_3696at 4214.474 kb on - strand, within PP_3696at 4214.518 kb on + strand, within PP_3696at 4214.582 kb on + strand, within PP_3696at 4214.582 kb on + strand, within PP_3696at 4214.583 kb on - strand, within PP_3696at 4214.583 kb on - strand, within PP_3696at 4214.584 kb on + strand, within PP_3696at 4214.584 kb on + strand, within PP_3696at 4214.584 kb on + strand, within PP_3696at 4214.584 kb on + strand, within PP_3696at 4214.585 kb on - strand, within PP_3696at 4214.585 kb on - strand, within PP_3696at 4214.708 kb on + strand, within PP_3696at 4214.708 kb on + strand, within PP_3696

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Per-strain Table

Position Strand Gene LocusTag Fraction Temperature shift 30_to_4; with MOPS
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4,211,620 + -2.9
4,211,620 + -0.6
4,211,621 - +0.7
4,211,629 - +0.5
4,211,629 - +1.3
4,211,637 + +0.2
4,211,637 + +0.2
4,211,645 + -0.4
4,211,678 - +0.3
4,211,678 - -0.1
4,211,678 - -0.3
4,211,683 + +0.1
4,211,683 + +0.4
4,211,683 + -0.3
4,211,688 - +0.5
4,211,688 - +0.1
4,211,748 + +2.0
4,211,773 - PP_3694 0.12 +0.0
4,211,788 - PP_3694 0.14 +0.7
4,211,788 - PP_3694 0.14 +0.3
4,211,788 - PP_3694 0.14 +1.2
4,211,799 + PP_3694 0.15 +1.4
4,211,800 - PP_3694 0.15 -2.4
4,211,800 - PP_3694 0.15 +0.1
4,211,835 + PP_3694 0.19 +0.4
4,211,836 - PP_3694 0.19 +0.2
4,211,836 - PP_3694 0.19 +0.8
4,211,847 - PP_3694 0.20 +1.0
4,211,857 + PP_3694 0.21 -1.5
4,211,858 - PP_3694 0.21 -1.3
4,211,858 - PP_3694 0.21 +0.6
4,211,908 + PP_3694 0.26 +0.8
4,211,932 + PP_3694 0.29 +0.7
4,211,933 - PP_3694 0.29 -0.1
4,211,933 - PP_3694 0.29 -0.1
4,211,933 - PP_3694 0.29 +1.3
4,211,933 - PP_3694 0.29 +1.1
4,211,933 - PP_3694 0.29 -0.1
4,211,943 + PP_3694 0.30 +0.1
4,211,944 - PP_3694 0.30 +0.0
4,211,958 - PP_3694 0.31 +1.2
4,212,006 + PP_3694 0.36 -1.1
4,212,007 - PP_3694 0.37 +0.1
4,212,110 + PP_3694 0.47 +1.3
4,212,134 + PP_3694 0.50 -0.0
4,212,134 + PP_3694 0.50 +1.2
4,212,144 + PP_3694 0.51 -0.2
4,212,144 + PP_3694 0.51 +0.6
4,212,144 + PP_3694 0.51 +1.0
4,212,158 - PP_3694 0.52 +0.6
4,212,158 - PP_3694 0.52 -0.0
4,212,174 + PP_3694 0.54 +0.6
4,212,175 - PP_3694 0.54 -0.3
4,212,183 + PP_3694 0.55 +0.4
4,212,184 - PP_3694 0.55 +0.7
4,212,187 + PP_3694 0.55 +0.4
4,212,228 + PP_3694 0.60 +1.4
4,212,267 + PP_3694 0.64 +0.7
4,212,267 + PP_3694 0.64 +0.9
4,212,267 + PP_3694 0.64 -0.1
4,212,267 + PP_3694 0.64 +2.7
4,212,268 - PP_3694 0.64 +0.2
4,212,268 - PP_3694 0.64 +0.7
4,212,268 - PP_3694 0.64 +0.1
4,212,268 - PP_3694 0.64 +1.5
4,212,294 - PP_3694 0.66 +0.9
4,212,301 + PP_3694 0.67 +1.9
4,212,302 - PP_3694 0.67 +0.5
4,212,340 + PP_3694 0.71 -0.1
4,212,340 + PP_3694 0.71 +0.8
4,212,341 - PP_3694 0.71 +0.5
4,212,341 - PP_3694 0.71 +1.0
4,212,393 - PP_3694 0.77 +0.3
4,212,393 - PP_3694 0.77 +0.5
4,212,404 + PP_3694 0.78 -0.4
4,212,404 + PP_3694 0.78 +0.7
4,212,404 + PP_3694 0.78 +1.1
4,212,405 - PP_3694 0.78 +0.6
4,212,405 - PP_3694 0.78 +1.2
4,212,405 - PP_3694 0.78 +0.8
4,212,466 + PP_3694 0.84 +0.1
4,212,466 + PP_3694 0.84 +0.9
4,212,466 + PP_3694 0.84 +0.0
4,212,466 + PP_3694 0.84 +0.1
4,212,466 + PP_3694 0.84 +0.8
4,212,466 + PP_3694 0.84 +0.7
4,212,467 - PP_3694 0.84 +0.2
4,212,467 - PP_3694 0.84 +1.3
4,212,471 - PP_3694 0.85 +0.5
4,212,561 + +0.6
4,212,562 - -1.6
4,212,564 + +1.0
4,212,565 - -2.0
4,212,571 + +1.6
4,212,616 - -3.0
4,212,703 - PP_3695 0.11 -3.7
4,212,719 + PP_3695 0.13 -1.8
4,212,720 - PP_3695 0.13 -3.1
4,212,720 - PP_3695 0.13 -3.4
4,212,720 - PP_3695 0.13 -4.0
4,212,776 + PP_3695 0.18 -0.3
4,212,785 + PP_3695 0.18 +0.3
4,212,786 - PP_3695 0.18 -4.4
4,212,786 - PP_3695 0.18 -3.6
4,212,786 - PP_3695 0.18 -2.9
4,212,786 - PP_3695 0.18 -3.7
4,212,795 + PP_3695 0.19 +2.0
4,212,840 - PP_3695 0.23 -3.4
4,212,849 - PP_3695 0.24 -3.5
4,212,865 + PP_3695 0.25 +0.3
4,212,927 + PP_3695 0.31 +0.6
4,213,008 + PP_3695 0.38 +0.3
4,213,008 + PP_3695 0.38 -1.1
4,213,008 + PP_3695 0.38 +0.2
4,213,009 - PP_3695 0.38 -4.1
4,213,009 - PP_3695 0.38 -4.0
4,213,009 - PP_3695 0.38 -3.1
4,213,009 - PP_3695 0.38 -4.0
4,213,009 - PP_3695 0.38 -4.5
4,213,052 + PP_3695 0.42 -0.9
4,213,103 + PP_3695 0.46 +0.4
4,213,104 - PP_3695 0.46 -4.5
4,213,104 - PP_3695 0.46 -4.4
4,213,111 + PP_3695 0.47 +0.6
4,213,159 + PP_3695 0.51 +0.1
4,213,215 - PP_3695 0.56 -3.1
4,213,215 - PP_3695 0.56 -2.9
4,213,218 + PP_3695 0.56 +1.8
4,213,219 - PP_3695 0.56 -3.6
4,213,219 - PP_3695 0.56 -1.9
4,213,272 + PP_3695 0.61 -0.2
4,213,272 + PP_3695 0.61 -0.2
4,213,285 - PP_3695 0.62 -4.9
4,213,319 + +0.3
4,213,319 + +0.1
4,213,319 + PP_3695 0.65 -1.0
4,213,320 - PP_3695 0.65 -1.4
4,213,402 + PP_3695 0.72 -1.2
4,213,402 + PP_3695 0.72 -0.8
4,213,403 - PP_3695 0.72 -2.5
4,213,403 - PP_3695 0.72 -3.8
4,213,403 - PP_3695 0.72 -3.4
4,213,403 - PP_3695 0.72 -4.1
4,213,403 - PP_3695 0.72 -1.8
4,213,413 + PP_3695 0.73 -0.1
4,213,413 + PP_3695 0.73 +0.1
4,213,414 - PP_3695 0.73 -4.6
4,213,414 - PP_3695 0.73 -3.5
4,213,424 + PP_3695 0.74 +0.7
4,213,425 - PP_3695 0.74 -2.7
4,213,425 - PP_3695 0.74 -3.8
4,213,425 - PP_3695 0.74 -3.3
4,213,425 - PP_3695 0.74 -3.7
4,213,425 - PP_3695 0.74 -4.3
4,213,425 - PP_3695 0.74 -4.3
4,213,437 - PP_3695 0.75 -3.4
4,213,476 + PP_3695 0.78 +0.5
4,213,485 + PP_3695 0.79 +1.2
4,213,604 + PP_3695 0.89 -0.4
4,213,611 - -3.7
4,213,684 + +0.4
4,213,697 + +0.0
4,213,697 + +0.3
4,213,697 + -0.0
4,213,697 + +1.6
4,213,697 + +1.0
4,213,704 + -0.4
4,213,704 + +0.3
4,213,725 - -3.4
4,213,795 + +3.1
4,213,824 + +0.7
4,213,825 - -2.0
4,213,825 - -1.2
4,213,910 + PP_3696 0.15 -0.2
4,214,007 - PP_3696 0.23 -3.9
4,214,066 + PP_3696 0.27 -0.6
4,214,066 + PP_3696 0.27 -1.6
4,214,066 + PP_3696 0.27 +0.6
4,214,067 - PP_3696 0.28 -2.0
4,214,074 + PP_3696 0.28 -0.4
4,214,074 + PP_3696 0.28 +0.9
4,214,075 - PP_3696 0.28 -4.6
4,214,075 - PP_3696 0.28 -0.1
4,214,083 - -0.9
4,214,196 + PP_3696 0.38 +0.4
4,214,196 + PP_3696 0.38 -0.2
4,214,196 + PP_3696 0.38 +0.3
4,214,196 + PP_3696 0.38 -1.9
4,214,197 - PP_3696 0.38 -4.4
4,214,197 - PP_3696 0.38 -4.3
4,214,216 + PP_3696 0.40 +0.7
4,214,217 - PP_3696 0.40 -3.8
4,214,217 - PP_3696 0.40 -3.9
4,214,231 + PP_3696 0.41 -1.1
4,214,276 - PP_3696 0.45 -3.3
4,214,315 + PP_3696 0.48 +1.4
4,214,315 + PP_3696 0.48 -0.2
4,214,315 + PP_3696 0.48 -0.1
4,214,315 + PP_3696 0.48 -1.6
4,214,315 + PP_3696 0.48 -0.1
4,214,315 + PP_3696 0.48 +0.6
4,214,315 + PP_3696 0.48 +0.3
4,214,316 - PP_3696 0.48 -2.4
4,214,316 - PP_3696 0.48 -3.2
4,214,316 - PP_3696 0.48 -1.8
4,214,316 - PP_3696 0.48 -3.3
4,214,374 - PP_3696 0.53 -2.4
4,214,386 + PP_3696 0.54 +0.9
4,214,386 + PP_3696 0.54 -0.9
4,214,387 - PP_3696 0.54 -3.8
4,214,387 - PP_3696 0.54 -2.1
4,214,458 - PP_3696 0.60 -3.5
4,214,458 - PP_3696 0.60 -0.9
4,214,458 - PP_3696 0.60 -1.7
4,214,473 + PP_3696 0.61 -0.2
4,214,473 + PP_3696 0.61 +0.0
4,214,473 + PP_3696 0.61 +0.9
4,214,474 - PP_3696 0.61 -2.3
4,214,518 + PP_3696 0.64 +0.3
4,214,582 + PP_3696 0.70 +0.2
4,214,582 + PP_3696 0.70 +1.0
4,214,583 - PP_3696 0.70 -1.6
4,214,583 - PP_3696 0.70 -1.6
4,214,584 + PP_3696 0.70 -0.4
4,214,584 + PP_3696 0.70 -3.2
4,214,584 + PP_3696 0.70 -0.9
4,214,584 + PP_3696 0.70 -0.2
4,214,585 - PP_3696 0.70 -0.4
4,214,585 - PP_3696 0.70 -2.0
4,214,708 + PP_3696 0.80 -0.5
4,214,708 + PP_3696 0.80 +0.6

Or see this region's nucleotide sequence