Strain Fitness in Pseudomonas putida KT2440

Strain Fitness in Pseudomonas putida KT2440 around PP_1118

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	Temperature shift 30_to_4
				remove
1,280,255	-			-0.1
1,280,256	+			-0.8
1,280,256	+			-2.1
1,280,259	+			-1.0
1,280,260	-			+0.7
1,280,260	-			-0.2
1,280,260	-			+0.2
1,280,311	-			-0.5
1,280,311	-			-0.4
1,280,333	-			+1.4
1,280,372	-			-0.8
1,280,431	-			+0.3
1,280,464	-			+0.2
1,280,491	-			-0.0
1,280,543	-			+0.9
1,280,626	-			+0.7
1,280,645	+			+0.8
1,280,676	+	PP_5742	0.13	-0.2
1,280,684	+	PP_5742	0.14	+0.1
1,280,916	-	PP_5742	0.55	+0.7
1,280,936	+	PP_5742	0.58	+0.5
1,280,947	-	PP_5742	0.60	+0.2
1,280,975	-	PP_5742	0.65	+0.7
1,280,976	+	PP_5742	0.65	+0.4
1,281,021	-	PP_5742	0.73	-0.2
1,281,045	-	PP_5742	0.77	-0.1
1,281,073	-	PP_5742	0.82	-1.0
1,281,206	+			+0.1
1,281,340	+			-0.6
1,281,340	+			-0.4
1,281,341	-			+0.2
1,281,345	-			-1.0
1,281,345	-			-1.6
1,281,353	+			+0.5
1,281,354	-			-1.5
1,281,395	+	PP_1118	0.11	-0.1
1,281,396	-	PP_1118	0.11	-0.1
1,281,461	+	PP_1118	0.14	+1.1
1,281,461	+	PP_1118	0.14	-0.8
1,281,477	+	PP_1118	0.15	-0.7
1,281,478	-	PP_1118	0.15	-1.8
1,281,519	+	PP_1118	0.18	-0.2
1,281,661	+	PP_1118	0.26	+0.4
1,281,661	+	PP_1118	0.26	-0.8
1,281,748	+	PP_1118	0.31	-0.4
1,281,748	+	PP_1118	0.31	+0.3
1,281,748	+	PP_1118	0.31	+0.0
1,281,749	-	PP_1118	0.31	-1.2
1,281,749	-	PP_1118	0.31	-0.6
1,281,749	-	PP_1118	0.31	+0.4
1,281,760	+	PP_1118	0.32	-0.0
1,281,761	-	PP_1118	0.32	+0.4
1,281,761	-	PP_1118	0.32	-0.7
1,281,803	-	PP_1118	0.35	-0.8
1,281,816	+	PP_1118	0.35	-1.2
1,281,816	+	PP_1118	0.35	+0.2
1,281,817	-	PP_1118	0.35	-0.0
1,281,817	-	PP_1118	0.35	+0.8
1,281,817	-	PP_1118	0.35	-0.5
1,281,817	-	PP_1118	0.35	-1.1
1,281,820	+	PP_1118	0.36	-0.4
1,281,820	+	PP_1118	0.36	-0.2
1,281,820	+	PP_1118	0.36	+0.3
1,281,820	+	PP_1118	0.36	+0.3
1,281,820	+	PP_1118	0.36	+0.6
1,281,820	+	PP_1118	0.36	-0.1
1,281,820	+	PP_1118	0.36	-0.6
1,281,820	+	PP_1118	0.36	+0.9
1,281,821	-	PP_1118	0.36	-1.1
1,281,821	-	PP_1118	0.36	+0.6
1,281,832	+	PP_1118	0.36	+0.2
1,281,832	+	PP_1118	0.36	+0.8
1,281,832	+	PP_1118	0.36	+0.4
1,281,833	-	PP_1118	0.36	-2.2
1,281,833	-	PP_1118	0.36	-0.1
1,281,833	-	PP_1118	0.36	-3.4
1,281,914	+	PP_1118	0.41	+1.0
1,281,914	+	PP_1118	0.41	-1.3
1,281,914	+	PP_1118	0.41	-0.3
1,281,914	+	PP_1118	0.41	-0.4
1,281,914	+	PP_1118	0.41	-0.0
1,281,917	+	PP_1118	0.41	+1.0
1,281,917	+	PP_1118	0.41	+0.1
1,281,917	+	PP_1118	0.41	-0.2
1,281,918	-	PP_1118	0.41	+0.1
1,281,921	+	PP_1118	0.42	-1.9
1,281,922	-	PP_1118	0.42	-1.3
1,281,922	-	PP_1118	0.42	-0.2
1,281,923	-	PP_1118	0.42	-0.6
1,282,055	-	PP_1118	0.50	-0.8
1,282,058	+	PP_1118	0.50	-0.4
1,282,058	+	PP_1118	0.50	-1.0
1,282,058	+	PP_1118	0.50	+0.4
1,282,091	+	PP_1118	0.52	-1.7
1,282,091	+	PP_1118	0.52	-0.1
1,282,092	-	PP_1118	0.52	-1.1
1,282,092	-	PP_1118	0.52	-0.5
1,282,138	+	PP_1118	0.54	-1.1
1,282,138	+	PP_1118	0.54	-2.4
1,282,138	+	PP_1118	0.54	+0.6
1,282,138	+	PP_1118	0.54	-0.6
1,282,138	+	PP_1118	0.54	-0.2
1,282,138	+	PP_1118	0.54	-3.2
1,282,138	+	PP_1118	0.54	-0.9
1,282,138	+	PP_1118	0.54	+0.9
1,282,139	-	PP_1118	0.54	-1.3
1,282,139	-	PP_1118	0.54	-0.2
1,282,139	-	PP_1118	0.54	-0.5
1,282,139	-	PP_1118	0.54	+1.3
1,282,139	-	PP_1118	0.54	+0.4
1,282,151	+	PP_1118	0.55	+0.4
1,282,152	-	PP_1118	0.55	-1.1
1,282,246	+	PP_1118	0.61	+0.6
1,282,247	-	PP_1118	0.61	+0.3
1,282,247	-	PP_1118	0.61	+0.9
1,282,247	-	PP_1118	0.61	+1.2
1,282,247	-	PP_1118	0.61	+1.5
1,282,247	-	PP_1118	0.61	-0.5
1,282,303	+	PP_1118	0.64	-0.1
1,282,303	+	PP_1118	0.64	+0.2
1,282,303	+	PP_1118	0.64	-1.2
1,282,303	+	PP_1118	0.64	-1.1
1,282,304	-	PP_1118	0.64	-0.2
1,282,304	-	PP_1118	0.64	+0.9
1,282,304	-	PP_1118	0.64	-0.4
1,282,352	+	PP_1118	0.67	-0.4
1,282,352	+	PP_1118	0.67	+0.1
1,282,352	+	PP_1118	0.67	-3.0
1,282,352	+	PP_1118	0.67	-0.1
1,282,352	+	PP_1118	0.67	+0.2
1,282,352	+	PP_1118	0.67	-0.7
1,282,352	+	PP_1118	0.67	-1.0
1,282,352	+			-0.8
1,282,352	+	PP_1118	0.67	-0.9
1,282,352	+	PP_1118	0.67	+1.0
1,282,353	-	PP_1118	0.67	-0.4
1,282,353	-	PP_1118	0.67	+0.0
1,282,353	-	PP_1118	0.67	-0.4
1,282,353	-	PP_1118	0.67	+0.6
1,282,353	-	PP_1118	0.67	-0.8
1,282,353	-	PP_1118	0.67	+0.4
1,282,353	-	PP_1118	0.67	+1.1
1,282,541	+	PP_1118	0.78	-0.1
1,282,541	+	PP_1118	0.78	-1.0
1,282,541	+	PP_1118	0.78	+0.2
1,282,541	+	PP_1118	0.78	+0.7
1,282,542	-	PP_1118	0.78	-0.4
1,282,542	-	PP_1118	0.78	-1.1
1,282,542	-	PP_1118	0.78	-2.6
1,282,542	-	PP_1118	0.78	+0.6
1,282,543	+	PP_1118	0.78	-1.3
1,282,543	+	PP_1118	0.78	-0.1
1,282,544	-	PP_1118	0.78	-0.9
1,282,544	-	PP_1118	0.78	+0.1
1,282,544	-	PP_1118	0.78	+1.0
1,282,565	+	PP_1118	0.80	-0.8
1,282,654	+	PP_1118	0.85	+0.6
1,282,654	+	PP_1118	0.85	-0.2
1,282,654	+	PP_1118	0.85	+0.1
1,282,655	-	PP_1118	0.85	-0.8
1,282,657	+	PP_1118	0.85	-0.4
1,282,657	+	PP_1118	0.85	+0.2
1,282,658	-	PP_1118	0.85	-1.3
1,282,658	-	PP_1118	0.85	-0.2
1,282,658	-	PP_1118	0.85	+0.7
1,282,658	-	PP_1118	0.85	-0.6
1,282,658	-	PP_1118	0.85	+0.5
1,282,658	-	PP_1118	0.85	-0.7
1,282,658	-	PP_1118	0.85	+0.1
1,282,661	+	PP_1118	0.85	-0.2
1,282,661	+	PP_1118	0.85	+1.1
1,282,661	+	PP_1118	0.85	+0.2
1,282,662	-	PP_1118	0.85	+0.6
1,282,662	-	PP_1118	0.85	-0.2
1,282,690	+	PP_1118	0.87	+0.8
1,282,690	+	PP_1118	0.87	+0.9
1,282,691	-	PP_1118	0.87	+0.7
1,282,691	-	PP_1118	0.87	+1.5
1,282,694	+	PP_1118	0.87	-2.4
1,282,694	+	PP_1118	0.87	+0.7
1,282,694	+	PP_1118	0.87	+0.4
1,282,694	+	PP_1118	0.87	+0.0
1,282,694	+	PP_1118	0.87	-0.5
1,282,695	-	PP_1118	0.87	-0.4
1,282,695	-	PP_1118	0.87	-0.8
1,282,695	-	PP_1118	0.87	-0.9
1,282,695	-	PP_1118	0.87	+0.6
1,282,695	-	PP_1118	0.87	+0.1
1,282,711	+	PP_1118	0.88	-1.4
1,282,711	+	PP_1118	0.88	-1.0
1,282,775	+			+1.0
1,282,775	+			-1.0
1,282,775	+			-0.0
1,282,776	-			-0.9
1,282,776	-			+0.4
1,282,783	-			+0.3
1,282,799	-			-0.0
1,282,843	-			-1.1
1,282,847	+			+0.3
1,282,847	+			+0.6
1,282,847	+			+0.0
1,282,848	-			-0.1
1,282,848	-			+1.2
1,282,848	-			+0.4
1,282,848	-			+1.5
1,282,848	-			-0.8
1,282,848	-			-1.1
1,282,919	+			+0.2
1,283,036	+	PP_1119	0.23	-1.6
1,283,036	+	PP_1119	0.23	+1.1
1,283,037	-	PP_1119	0.23	+0.2
1,283,037	-	PP_1119	0.23	-0.7
1,283,264	+	PP_1119	0.70	-0.1
1,283,286	-	PP_1119	0.74	+0.4
1,283,286	-	PP_1119	0.74	-2.2
1,283,286	-	PP_1119	0.74	+0.3
1,283,294	+	PP_1119	0.76	+2.0
1,283,345	+	PP_1119	0.87	-0.6
1,283,345	+	PP_1119	0.87	-1.4
1,283,346	-	PP_1119	0.87	-0.7
1,283,346	-	PP_1119	0.87	-1.2
1,283,346	-	PP_1119	0.87	-0.8
1,283,419	+			+0.6
1,283,420	-			+1.7
1,283,420	-			-0.5
1,283,420	-			+0.2
1,283,420	-			-0.0
1,283,420	-			-1.7
1,283,480	+	PP_1120	0.14	+0.8
1,283,480	+	PP_1120	0.14	+0.3
1,283,480	+	PP_1120	0.14	+0.2
1,283,480	+	PP_1120	0.14	-0.3
1,283,480	+	PP_1120	0.14	-2.5
1,283,480	+			+0.0
1,283,480	+	PP_1120	0.14	+1.9
1,283,480	+	PP_1120	0.14	-0.3
1,283,480	+	PP_1120	0.14	-0.1
1,283,480	+	PP_1120	0.14	+0.4
1,283,481	-	PP_1120	0.15	+0.3
1,283,481	-	PP_1120	0.15	+0.5
1,283,481	-	PP_1120	0.15	+0.4
1,283,481	-	PP_1120	0.15	-0.2
1,283,481	-	PP_1120	0.15	-0.0
1,283,481	-	PP_1120	0.15	-2.2
1,283,481	-	PP_1120	0.15	-0.3
1,283,482	+	PP_1120	0.15	-0.3
1,283,482	+	PP_1120	0.15	+1.2
1,283,482	+	PP_1120	0.15	+0.2
1,283,482	+	PP_1120	0.15	-0.7
1,283,483	-	PP_1120	0.15	-0.2
1,283,483	-	PP_1120	0.15	+0.3
1,283,490	+	PP_1120	0.16	-0.1
1,283,490	+	PP_1120	0.16	-0.3
1,283,490	+	PP_1120	0.16	+0.5
1,283,490	+	PP_1120	0.16	-0.1
1,283,491	-	PP_1120	0.17	-0.6
1,283,491	-	PP_1120	0.17	-0.6
1,283,491	-	PP_1120	0.17	+0.0
1,283,491	-	PP_1120	0.17	-0.6
1,283,491	-	PP_1120	0.17	-0.3
1,283,491	-	PP_1120	0.17	+0.6
1,283,497	+	PP_1120	0.18	-1.3
1,283,497	+	PP_1120	0.18	-3.9
1,283,498	-	PP_1120	0.18	-2.4
1,283,498	-	PP_1120	0.18	-0.7
1,283,813	+	PP_1120	0.82	-1.5
1,283,813	+	PP_1120	0.82	-0.6
1,283,818	-	PP_1120	0.83	-1.2

Or see this region's nucleotide sequence