Strain Fitness in Pseudomonas simiae WCS417 around PS417_24445

Experiment: R2A control with 0.2X Vogels

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_24435 and PS417_24440 are separated by 133 nucleotidesPS417_24440 and PS417_24445 are separated by 78 nucleotidesPS417_24445 and PS417_24450 are separated by 221 nucleotides PS417_24435: PS417_24435 - shikimate dehydrogenase, at 5,304,356 to 5,305,204 _24435 PS417_24440: PS417_24440 - TetR family transcriptional regulator, at 5,305,338 to 5,305,979 _24440 PS417_24445: PS417_24445 - 4-hydroxyphenylpyruvate dioxygenase, at 5,306,058 to 5,307,959 _24445 PS417_24450: PS417_24450 - membrane protein, at 5,308,181 to 5,309,515 _24450 Position (kb) 5306 5307 5308Strain fitness (log2 ratio) -2 -1 0 1 2at 5305.198 kb on + strandat 5305.198 kb on + strandat 5305.335 kb on + strandat 5305.394 kb on + strandat 5305.440 kb on - strand, within PS417_24440at 5305.610 kb on - strand, within PS417_24440at 5305.813 kb on + strand, within PS417_24440at 5305.813 kb on + strand, within PS417_24440at 5305.816 kb on + strand, within PS417_24440at 5305.816 kb on + strand, within PS417_24440at 5305.817 kb on - strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.819 kb on + strand, within PS417_24440at 5305.820 kb on - strand, within PS417_24440at 5305.820 kb on - strand, within PS417_24440at 5305.918 kb on - strandat 5306.000 kb on + strandat 5306.060 kb on - strandat 5306.061 kb on + strandat 5306.062 kb on - strandat 5306.137 kb on + strandat 5306.146 kb on + strandat 5306.203 kb on + strandat 5306.203 kb on + strandat 5306.204 kb on - strandat 5306.204 kb on - strandat 5306.204 kb on - strandat 5306.204 kb on - strandat 5306.204 kb on - strandat 5306.242 kb on + strandat 5306.243 kb on - strandat 5306.254 kb on + strand, within PS417_24445at 5306.254 kb on + strand, within PS417_24445at 5306.255 kb on - strand, within PS417_24445at 5306.255 kb on - strand, within PS417_24445at 5306.255 kb on - strand, within PS417_24445at 5306.257 kb on + strand, within PS417_24445at 5306.314 kb on + strand, within PS417_24445at 5306.314 kb on + strand, within PS417_24445at 5306.314 kb on + strand, within PS417_24445at 5306.314 kb on + strand, within PS417_24445at 5306.315 kb on - strand, within PS417_24445at 5306.315 kb on - strand, within PS417_24445at 5306.317 kb on + strand, within PS417_24445at 5306.317 kb on + strand, within PS417_24445at 5306.317 kb on + strand, within PS417_24445at 5306.317 kb on + strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.318 kb on - strand, within PS417_24445at 5306.587 kb on + strand, within PS417_24445at 5306.701 kb on + strand, within PS417_24445at 5306.702 kb on - strand, within PS417_24445at 5306.702 kb on - strand, within PS417_24445at 5306.731 kb on + strand, within PS417_24445at 5306.732 kb on - strand, within PS417_24445at 5306.815 kb on + strand, within PS417_24445at 5306.816 kb on - strand, within PS417_24445at 5306.917 kb on + strand, within PS417_24445at 5307.023 kb on - strand, within PS417_24445at 5307.083 kb on - strand, within PS417_24445at 5307.173 kb on - strand, within PS417_24445at 5307.475 kb on - strand, within PS417_24445at 5307.475 kb on - strandat 5307.530 kb on + strand, within PS417_24445at 5307.531 kb on - strand, within PS417_24445at 5307.626 kb on + strand, within PS417_24445at 5307.626 kb on + strand, within PS417_24445at 5307.627 kb on - strand, within PS417_24445at 5307.627 kb on - strand, within PS417_24445at 5307.822 kb on - strandat 5307.822 kb on - strandat 5307.845 kb on - strandat 5307.847 kb on + strandat 5307.847 kb on + strandat 5307.848 kb on - strandat 5307.873 kb on + strandat 5307.948 kb on - strandat 5307.948 kb on - strandat 5307.948 kb on - strandat 5307.948 kb on - strandat 5307.989 kb on + strandat 5307.990 kb on - strandat 5307.993 kb on + strandat 5308.013 kb on + strandat 5308.323 kb on - strand, within PS417_24450at 5308.323 kb on - strand, within PS417_24450at 5308.394 kb on + strand, within PS417_24450at 5308.428 kb on - strandat 5308.601 kb on + strand, within PS417_24450at 5308.666 kb on + strand, within PS417_24450at 5308.734 kb on + strand, within PS417_24450at 5308.734 kb on + strand, within PS417_24450at 5308.734 kb on + strand, within PS417_24450at 5308.734 kb on + strand, within PS417_24450at 5308.735 kb on - strand, within PS417_24450at 5308.735 kb on - strand, within PS417_24450at 5308.735 kb on - strand, within PS417_24450at 5308.856 kb on + strand, within PS417_24450at 5308.857 kb on - strand, within PS417_24450at 5308.857 kb on - strand, within PS417_24450at 5308.947 kb on - strand, within PS417_24450

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A control with 0.2X Vogels
remove
5,305,198 + -0.4
5,305,198 + +1.6
5,305,335 + -0.3
5,305,394 + +0.2
5,305,440 - PS417_24440 0.16 +0.2
5,305,610 - PS417_24440 0.42 +0.6
5,305,813 + PS417_24440 0.74 -0.4
5,305,813 + PS417_24440 0.74 -0.3
5,305,816 + PS417_24440 0.74 -0.5
5,305,816 + PS417_24440 0.74 +0.1
5,305,817 - PS417_24440 0.75 -1.6
5,305,819 + PS417_24440 0.75 +0.3
5,305,819 + PS417_24440 0.75 -0.6
5,305,819 + PS417_24440 0.75 -0.0
5,305,819 + PS417_24440 0.75 +0.2
5,305,819 + PS417_24440 0.75 -0.0
5,305,819 + PS417_24440 0.75 -0.9
5,305,819 + PS417_24440 0.75 +1.2
5,305,819 + PS417_24440 0.75 -0.6
5,305,819 + PS417_24440 0.75 -1.5
5,305,819 + PS417_24440 0.75 +1.1
5,305,819 + PS417_24440 0.75 -1.0
5,305,819 + PS417_24440 0.75 -0.2
5,305,820 - PS417_24440 0.75 -0.5
5,305,820 - PS417_24440 0.75 +0.1
5,305,918 - +1.6
5,306,000 + -0.3
5,306,060 - +0.3
5,306,061 + -0.9
5,306,062 - -0.7
5,306,137 + -0.3
5,306,146 + -1.0
5,306,203 + +0.1
5,306,203 + -0.2
5,306,204 - -0.2
5,306,204 - -0.5
5,306,204 - +1.7
5,306,204 - +0.2
5,306,204 - -0.7
5,306,242 + -0.0
5,306,243 - -0.7
5,306,254 + PS417_24445 0.10 -0.0
5,306,254 + PS417_24445 0.10 -2.4
5,306,255 - PS417_24445 0.10 -0.3
5,306,255 - PS417_24445 0.10 -1.3
5,306,255 - PS417_24445 0.10 -0.9
5,306,257 + PS417_24445 0.10 -0.6
5,306,314 + PS417_24445 0.13 -0.3
5,306,314 + PS417_24445 0.13 -0.1
5,306,314 + PS417_24445 0.13 -0.2
5,306,314 + PS417_24445 0.13 -1.2
5,306,315 - PS417_24445 0.14 -0.3
5,306,315 - PS417_24445 0.14 +0.4
5,306,317 + PS417_24445 0.14 -0.7
5,306,317 + PS417_24445 0.14 +0.3
5,306,317 + PS417_24445 0.14 -0.9
5,306,317 + PS417_24445 0.14 -0.2
5,306,318 - PS417_24445 0.14 +0.3
5,306,318 - PS417_24445 0.14 +0.3
5,306,318 - PS417_24445 0.14 -1.1
5,306,318 - PS417_24445 0.14 -0.2
5,306,318 - PS417_24445 0.14 -0.0
5,306,318 - PS417_24445 0.14 -2.3
5,306,318 - PS417_24445 0.14 -0.4
5,306,587 + PS417_24445 0.28 +0.3
5,306,701 + PS417_24445 0.34 -0.3
5,306,702 - PS417_24445 0.34 -0.6
5,306,702 - PS417_24445 0.34 -1.5
5,306,731 + PS417_24445 0.35 -0.5
5,306,732 - PS417_24445 0.35 -0.5
5,306,815 + PS417_24445 0.40 -0.4
5,306,816 - PS417_24445 0.40 +0.0
5,306,917 + PS417_24445 0.45 +0.3
5,307,023 - PS417_24445 0.51 +0.3
5,307,083 - PS417_24445 0.54 -1.3
5,307,173 - PS417_24445 0.59 +0.7
5,307,475 - PS417_24445 0.75 +0.3
5,307,475 - +0.7
5,307,530 + PS417_24445 0.77 +0.1
5,307,531 - PS417_24445 0.77 -0.4
5,307,626 + PS417_24445 0.82 -0.6
5,307,626 + PS417_24445 0.82 -0.9
5,307,627 - PS417_24445 0.82 -2.2
5,307,627 - PS417_24445 0.82 -0.3
5,307,822 - -0.3
5,307,822 - -0.4
5,307,845 - -0.2
5,307,847 + +0.5
5,307,847 + -0.2
5,307,848 - -0.0
5,307,873 + +0.3
5,307,948 - -1.3
5,307,948 - +0.1
5,307,948 - -0.6
5,307,948 - +2.6
5,307,989 + -0.1
5,307,990 - +0.3
5,307,993 + +1.1
5,308,013 + -1.4
5,308,323 - PS417_24450 0.11 -0.3
5,308,323 - PS417_24450 0.11 -0.7
5,308,394 + PS417_24450 0.16 +0.1
5,308,428 - -0.3
5,308,601 + PS417_24450 0.31 +0.5
5,308,666 + PS417_24450 0.36 +0.3
5,308,734 + PS417_24450 0.41 -0.4
5,308,734 + PS417_24450 0.41 -1.1
5,308,734 + PS417_24450 0.41 -0.4
5,308,734 + PS417_24450 0.41 -0.2
5,308,735 - PS417_24450 0.41 -2.0
5,308,735 - PS417_24450 0.41 -0.3
5,308,735 - PS417_24450 0.41 -1.0
5,308,856 + PS417_24450 0.51 +1.3
5,308,857 - PS417_24450 0.51 -0.1
5,308,857 - PS417_24450 0.51 -0.1
5,308,947 - PS417_24450 0.57 -0.2

Or see this region's nucleotide sequence