Experiment: R2A control with 0.2X Vogels
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26845 and PS417_26850 are separated by 28 nucleotides PS417_26850 and PS417_26855 are separated by 85 nucleotides PS417_26855 and PS417_26860 are separated by 114 nucleotides PS417_26860 and PS417_26865 are separated by 103 nucleotides
PS417_26845: PS417_26845 - coniferyl aldehyde dehydrogenase, at 5,796,347 to 5,797,774
_26845
PS417_26850: PS417_26850 - twin-arginine translocation pathway signal protein, at 5,797,803 to 5,798,348
_26850
PS417_26855: PS417_26855 - GMC family oxidoreductase, at 5,798,434 to 5,800,029
_26855
PS417_26860: PS417_26860 - phosphopantetheine adenylyltransferase, at 5,800,144 to 5,800,623
_26860
PS417_26865: PS417_26865 - ferredoxin, at 5,800,727 to 5,800,978
_26865
Position (kb) 5798
5799
5800
5801 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5797.457 kb on + strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.490 kb on + strand, within PS417_26845 at 5797.491 kb on - strand, within PS417_26845 at 5797.493 kb on + strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.959 kb on - strand, within PS417_26850 at 5798.346 kb on + strand at 5798.412 kb on - strand at 5798.665 kb on + strand, within PS417_26855 at 5798.665 kb on + strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.782 kb on - strand, within PS417_26855 at 5798.835 kb on + strand, within PS417_26855 at 5798.927 kb on + strand, within PS417_26855 at 5798.928 kb on - strand, within PS417_26855 at 5798.980 kb on - strand, within PS417_26855 at 5799.007 kb on + strand, within PS417_26855 at 5799.097 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.221 kb on - strand, within PS417_26855 at 5799.368 kb on - strand, within PS417_26855 at 5799.389 kb on - strand, within PS417_26855 at 5799.389 kb on - strand, within PS417_26855 at 5799.437 kb on - strand, within PS417_26855 at 5799.437 kb on - strand, within PS417_26855 at 5799.437 kb on - strand, within PS417_26855 at 5799.631 kb on + strand, within PS417_26855 at 5799.632 kb on - strand, within PS417_26855 at 5799.646 kb on + strand, within PS417_26855 at 5799.745 kb on + strand, within PS417_26855 at 5799.746 kb on - strand, within PS417_26855 at 5799.746 kb on - strand, within PS417_26855 at 5799.973 kb on + strand at 5799.973 kb on + strand at 5800.041 kb on - strand at 5800.053 kb on + strand at 5800.053 kb on + strand at 5800.053 kb on + strand at 5800.054 kb on - strand at 5800.054 kb on - strand at 5800.054 kb on - strand at 5800.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control with 0.2X Vogels remove 5,797,457 + PS417_26845 0.78 +1.6 5,797,458 - PS417_26845 0.78 +0.5 5,797,458 - PS417_26845 0.78 +1.2 5,797,458 - PS417_26845 0.78 -0.1 5,797,490 + PS417_26845 0.80 -0.3 5,797,491 - PS417_26845 0.80 +0.8 5,797,493 + PS417_26845 0.80 -0.4 5,797,494 - PS417_26845 0.80 +0.2 5,797,494 - PS417_26845 0.80 -0.1 5,797,494 - PS417_26845 0.80 +0.3 5,797,494 - PS417_26845 0.80 +0.1 5,797,959 - PS417_26850 0.29 +0.5 5,798,346 + -0.7 5,798,412 - +0.2 5,798,665 + PS417_26855 0.14 +0.4 5,798,665 + PS417_26855 0.14 +1.7 5,798,666 - PS417_26855 0.15 +2.2 5,798,666 - PS417_26855 0.15 +1.0 5,798,666 - PS417_26855 0.15 -2.5 5,798,782 - PS417_26855 0.22 +1.4 5,798,835 + PS417_26855 0.25 +0.5 5,798,927 + PS417_26855 0.31 +1.2 5,798,928 - PS417_26855 0.31 +0.0 5,798,980 - PS417_26855 0.34 -0.2 5,799,007 + PS417_26855 0.36 +1.6 5,799,097 + PS417_26855 0.42 +0.6 5,799,220 + PS417_26855 0.49 +1.0 5,799,220 + PS417_26855 0.49 +0.0 5,799,220 + PS417_26855 0.49 +0.3 5,799,220 + PS417_26855 0.49 -0.2 5,799,221 - PS417_26855 0.49 -2.5 5,799,368 - PS417_26855 0.59 +0.9 5,799,389 - PS417_26855 0.60 +0.3 5,799,389 - PS417_26855 0.60 -0.3 5,799,437 - PS417_26855 0.63 -1.3 5,799,437 - PS417_26855 0.63 +0.6 5,799,437 - PS417_26855 0.63 -0.1 5,799,631 + PS417_26855 0.75 +0.6 5,799,632 - PS417_26855 0.75 -0.4 5,799,646 + PS417_26855 0.76 -0.0 5,799,745 + PS417_26855 0.82 -0.6 5,799,746 - PS417_26855 0.82 +0.5 5,799,746 - PS417_26855 0.82 -1.4 5,799,973 + -0.3 5,799,973 + +0.4 5,800,041 - +1.6 5,800,053 + +0.7 5,800,053 + -0.5 5,800,053 + +0.1 5,800,054 - +0.2 5,800,054 - -0.4 5,800,054 - +0.9 5,800,621 + -2.3
Or see this region's nucleotide sequence