Strain Fitness in Escherichia coli BW25113 around b2273

Experiment: T7_phage 0.00015625 MOI TC4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfbL and yfbM are separated by 102 nucleotidesyfbM and yfbN are separated by 272 nucleotidesyfbN and yfbO are separated by 208 nucleotidesyfbO and yfbP are separated by 58 nucleotides b2271: yfbL - putative aminopeptidase (VIMSS), at 2,383,882 to 2,384,853 yfbL b2272: yfbM - hypothetical protein (NCBI), at 2,384,956 to 2,385,459 yfbM b2273: yfbN - hypothetical protein (NCBI), at 2,385,732 to 2,386,448 yfbN b2274: yfbO - predicted protein (RefSeq), at 2,386,657 to 2,387,079 yfbO b2275: yfbP - TPR-like repeats-containing protein (NCBI), at 2,387,138 to 2,387,986 yfbP Position (kb) 2385 2386 2387Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2384.917 kb on - strandat 2385.135 kb on - strand, within yfbMat 2385.170 kb on - strand, within yfbMat 2385.184 kb on + strand, within yfbMat 2385.190 kb on - strand, within yfbMat 2385.202 kb on - strand, within yfbMat 2385.216 kb on + strand, within yfbMat 2385.252 kb on + strand, within yfbMat 2385.269 kb on + strand, within yfbMat 2385.269 kb on + strand, within yfbMat 2385.404 kb on + strand, within yfbMat 2385.420 kb on + strandat 2385.428 kb on + strandat 2385.441 kb on + strandat 2385.443 kb on + strandat 2385.444 kb on + strandat 2385.449 kb on + strandat 2385.456 kb on + strandat 2385.456 kb on + strandat 2385.458 kb on + strandat 2385.475 kb on + strandat 2385.476 kb on + strandat 2385.476 kb on + strandat 2385.484 kb on + strandat 2385.486 kb on + strandat 2385.553 kb on + strandat 2385.558 kb on + strandat 2385.558 kb on + strandat 2386.671 kb on - strandat 2386.721 kb on - strand, within yfbOat 2386.781 kb on - strand, within yfbOat 2386.781 kb on - strand, within yfbOat 2386.788 kb on - strand, within yfbOat 2386.819 kb on + strand, within yfbOat 2386.859 kb on - strand, within yfbOat 2386.859 kb on - strand, within yfbOat 2386.859 kb on - strand, within yfbOat 2386.870 kb on - strand, within yfbOat 2386.885 kb on - strand, within yfbOat 2386.898 kb on - strand, within yfbOat 2386.898 kb on - strand, within yfbOat 2386.908 kb on - strand, within yfbOat 2386.992 kb on - strand, within yfbOat 2386.992 kb on - strand, within yfbOat 2386.997 kb on + strand, within yfbOat 2387.005 kb on - strand, within yfbOat 2387.005 kb on - strand, within yfbOat 2387.013 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.022 kb on + strand, within yfbOat 2387.041 kb on + strandat 2387.041 kb on + strandat 2387.044 kb on + strandat 2387.044 kb on + strandat 2387.046 kb on + strandat 2387.048 kb on + strandat 2387.048 kb on - strandat 2387.066 kb on - strandat 2387.214 kb on + strandat 2387.237 kb on + strand, within yfbPat 2387.245 kb on - strand, within yfbPat 2387.266 kb on + strand, within yfbPat 2387.266 kb on + strand, within yfbPat 2387.269 kb on - strand, within yfbPat 2387.280 kb on + strand, within yfbPat 2387.294 kb on - strand, within yfbPat 2387.297 kb on + strand, within yfbPat 2387.354 kb on + strand, within yfbP

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Per-strain Table

Position Strand Gene LocusTag Fraction T7_phage 0.00015625 MOI TC4
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2,384,917 - +2.8
2,385,135 - yfbM b2272 0.36 +0.8
2,385,170 - yfbM b2272 0.42 +1.8
2,385,184 + yfbM b2272 0.45 +3.4
2,385,190 - yfbM b2272 0.46 +2.8
2,385,202 - yfbM b2272 0.49 -0.1
2,385,216 + yfbM b2272 0.52 -0.7
2,385,252 + yfbM b2272 0.59 +1.7
2,385,269 + yfbM b2272 0.62 -0.5
2,385,269 + yfbM b2272 0.62 +1.7
2,385,404 + yfbM b2272 0.89 -0.2
2,385,420 + -2.5
2,385,428 + -0.9
2,385,441 + -1.5
2,385,443 + +1.9
2,385,444 + -1.9
2,385,449 + +0.1
2,385,456 + -1.5
2,385,456 + -1.0
2,385,458 + +1.7
2,385,475 + -1.2
2,385,476 + -1.3
2,385,476 + -0.5
2,385,484 + +3.5
2,385,486 + -0.6
2,385,553 + -0.2
2,385,558 + +1.8
2,385,558 + +2.8
2,386,671 - +2.7
2,386,721 - yfbO b2274 0.15 +2.7
2,386,781 - yfbO b2274 0.29 +1.2
2,386,781 - yfbO b2274 0.29 +0.2
2,386,788 - yfbO b2274 0.31 +4.7
2,386,819 + yfbO b2274 0.38 +2.7
2,386,859 - yfbO b2274 0.48 +0.6
2,386,859 - yfbO b2274 0.48 -0.6
2,386,859 - yfbO b2274 0.48 +1.2
2,386,870 - yfbO b2274 0.50 +2.6
2,386,885 - yfbO b2274 0.54 -0.4
2,386,898 - yfbO b2274 0.57 +0.4
2,386,898 - yfbO b2274 0.57 +0.7
2,386,908 - yfbO b2274 0.59 -0.4
2,386,992 - yfbO b2274 0.79 +2.7
2,386,992 - yfbO b2274 0.79 +0.7
2,386,997 + yfbO b2274 0.80 +0.2
2,387,005 - yfbO b2274 0.82 +2.7
2,387,005 - yfbO b2274 0.82 +1.7
2,387,013 + yfbO b2274 0.84 +0.7
2,387,020 + yfbO b2274 0.86 -2.5
2,387,020 + yfbO b2274 0.86 +0.4
2,387,020 + yfbO b2274 0.86 +1.7
2,387,020 + yfbO b2274 0.86 +2.7
2,387,022 + yfbO b2274 0.86 -0.0
2,387,041 + +0.4
2,387,041 + +1.2
2,387,044 + +1.1
2,387,044 + +0.0
2,387,046 + +1.8
2,387,048 + +1.6
2,387,048 - +1.4
2,387,066 - +2.7
2,387,214 + +2.7
2,387,237 + yfbP b2275 0.12 +0.2
2,387,245 - yfbP b2275 0.13 +0.4
2,387,266 + yfbP b2275 0.15 -1.9
2,387,266 + yfbP b2275 0.15 +0.2
2,387,269 - yfbP b2275 0.15 +0.8
2,387,280 + yfbP b2275 0.17 -1.6
2,387,294 - yfbP b2275 0.18 +1.2
2,387,297 + yfbP b2275 0.19 -1.6
2,387,354 + yfbP b2275 0.25 +2.0

Or see this region's nucleotide sequence