Strain Fitness in Escherichia coli BW25113 around b2624

Experiment: T7_phage 0.00015625 MOI TC3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfjH and alpA are separated by 43 nucleotidesalpA and yfjI are separated by 128 nucleotides b2623: yfjH - CP4-57 prophage; predicted protein (NCBI), at 2,755,666 to 2,756,622 yfjH b2624: alpA - CP4-57 prophage; DNA-binding transcriptional activator (NCBI), at 2,756,666 to 2,756,878 alpA b2625: yfjI - CP4-57 prophage; predicted protein (NCBI), at 2,757,007 to 2,758,416 yfjI Position (kb) 2756 2757Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2755.948 kb on - strand, within yfjHat 2756.090 kb on - strand, within yfjHat 2756.123 kb on - strand, within yfjHat 2756.158 kb on - strand, within yfjHat 2756.158 kb on - strand, within yfjHat 2756.165 kb on - strand, within yfjHat 2756.259 kb on - strand, within yfjHat 2756.306 kb on - strand, within yfjHat 2756.306 kb on - strand, within yfjHat 2756.308 kb on - strand, within yfjHat 2756.308 kb on - strand, within yfjHat 2756.317 kb on - strand, within yfjHat 2756.317 kb on - strand, within yfjHat 2756.317 kb on - strand, within yfjHat 2756.317 kb on - strand, within yfjHat 2756.318 kb on - strand, within yfjHat 2756.320 kb on - strand, within yfjHat 2756.325 kb on - strand, within yfjHat 2756.325 kb on - strand, within yfjHat 2756.334 kb on - strand, within yfjHat 2756.335 kb on - strand, within yfjHat 2756.389 kb on - strand, within yfjHat 2756.389 kb on - strand, within yfjHat 2756.389 kb on - strand, within yfjHat 2756.412 kb on - strand, within yfjHat 2756.412 kb on - strand, within yfjHat 2756.412 kb on - strand, within yfjHat 2756.412 kb on - strand, within yfjHat 2756.412 kb on - strand, within yfjHat 2756.412 kb on - strand, within yfjHat 2756.445 kb on - strand, within yfjHat 2756.445 kb on - strand, within yfjHat 2756.457 kb on - strand, within yfjHat 2756.493 kb on - strand, within yfjHat 2756.499 kb on - strand, within yfjHat 2756.569 kb on - strandat 2756.611 kb on + strandat 2756.698 kb on - strand, within alpAat 2756.698 kb on - strand, within alpAat 2756.703 kb on - strand, within alpAat 2756.737 kb on - strand, within alpAat 2756.737 kb on - strand, within alpAat 2756.739 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.741 kb on + strand, within alpAat 2756.746 kb on - strand, within alpAat 2756.749 kb on - strand, within alpAat 2756.751 kb on - strand, within alpAat 2756.758 kb on + strand, within alpAat 2756.758 kb on + strand, within alpAat 2756.768 kb on + strand, within alpAat 2756.768 kb on + strand, within alpAat 2756.808 kb on + strand, within alpAat 2756.827 kb on + strand, within alpAat 2756.827 kb on + strand, within alpAat 2756.827 kb on + strand, within alpAat 2756.838 kb on + strand, within alpAat 2756.838 kb on + strand, within alpAat 2756.838 kb on + strand, within alpAat 2756.838 kb on + strand, within alpAat 2756.838 kb on + strand, within alpAat 2756.848 kb on + strand, within alpAat 2756.848 kb on + strand, within alpAat 2756.850 kb on + strand, within alpAat 2756.850 kb on + strand, within alpAat 2756.850 kb on + strand, within alpAat 2756.862 kb on + strandat 2756.893 kb on + strandat 2756.906 kb on + strandat 2756.909 kb on + strandat 2756.916 kb on + strandat 2756.918 kb on + strandat 2756.918 kb on + strandat 2756.918 kb on + strandat 2756.920 kb on + strandat 2757.018 kb on - strandat 2757.084 kb on - strandat 2757.088 kb on - strandat 2757.089 kb on - strandat 2757.089 kb on - strandat 2757.092 kb on - strandat 2757.093 kb on - strandat 2757.093 kb on - strandat 2757.107 kb on - strandat 2757.184 kb on - strand, within yfjIat 2757.521 kb on - strand, within yfjIat 2757.523 kb on - strand, within yfjIat 2757.575 kb on + strand, within yfjIat 2757.776 kb on + strand, within yfjIat 2757.780 kb on + strand, within yfjIat 2757.791 kb on + strand, within yfjIat 2757.791 kb on + strand, within yfjIat 2757.791 kb on + strand, within yfjIat 2757.838 kb on + strand, within yfjIat 2757.838 kb on + strand, within yfjI

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Per-strain Table

Position Strand Gene LocusTag Fraction T7_phage 0.00015625 MOI TC3
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2,755,948 - yfjH b2623 0.29 +2.6
2,756,090 - yfjH b2623 0.44 +1.6
2,756,123 - yfjH b2623 0.48 +2.3
2,756,158 - yfjH b2623 0.51 +2.6
2,756,158 - yfjH b2623 0.51 +0.6
2,756,165 - yfjH b2623 0.52 +1.9
2,756,259 - yfjH b2623 0.62 -1.2
2,756,306 - yfjH b2623 0.67 -0.4
2,756,306 - yfjH b2623 0.67 +1.9
2,756,308 - yfjH b2623 0.67 +2.6
2,756,308 - yfjH b2623 0.67 -1.1
2,756,317 - yfjH b2623 0.68 -0.2
2,756,317 - yfjH b2623 0.68 +3.6
2,756,317 - yfjH b2623 0.68 -1.4
2,756,317 - yfjH b2623 0.68 +0.6
2,756,318 - yfjH b2623 0.68 +1.6
2,756,320 - yfjH b2623 0.68 +2.6
2,756,325 - yfjH b2623 0.69 +0.6
2,756,325 - yfjH b2623 0.69 +1.0
2,756,334 - yfjH b2623 0.70 +0.0
2,756,335 - yfjH b2623 0.70 -1.1
2,756,389 - yfjH b2623 0.76 -1.9
2,756,389 - yfjH b2623 0.76 +2.3
2,756,389 - yfjH b2623 0.76 +3.5
2,756,412 - yfjH b2623 0.78 +1.9
2,756,412 - yfjH b2623 0.78 +3.9
2,756,412 - yfjH b2623 0.78 -0.4
2,756,412 - yfjH b2623 0.78 -1.1
2,756,412 - yfjH b2623 0.78 -0.9
2,756,412 - yfjH b2623 0.78 +1.0
2,756,445 - yfjH b2623 0.81 +3.2
2,756,445 - yfjH b2623 0.81 -1.5
2,756,457 - yfjH b2623 0.83 +2.6
2,756,493 - yfjH b2623 0.86 +1.3
2,756,499 - yfjH b2623 0.87 +0.4
2,756,569 - -0.4
2,756,611 + +0.8
2,756,698 - alpA b2624 0.15 -1.1
2,756,698 - alpA b2624 0.15 -0.7
2,756,703 - alpA b2624 0.17 +1.5
2,756,737 - alpA b2624 0.33 +1.6
2,756,737 - alpA b2624 0.33 -1.5
2,756,739 + alpA b2624 0.34 -1.9
2,756,741 + alpA b2624 0.35 +0.7
2,756,741 + alpA b2624 0.35 -1.6
2,756,741 + alpA b2624 0.35 +0.0
2,756,741 + alpA b2624 0.35 +0.1
2,756,741 + alpA b2624 0.35 -0.2
2,756,741 + alpA b2624 0.35 +2.3
2,756,741 + alpA b2624 0.35 +1.7
2,756,741 + alpA b2624 0.35 -1.0
2,756,741 + alpA b2624 0.35 -1.1
2,756,741 + alpA b2624 0.35 +1.8
2,756,741 + alpA b2624 0.35 +3.1
2,756,741 + alpA b2624 0.35 -1.6
2,756,746 - alpA b2624 0.38 +3.0
2,756,749 - alpA b2624 0.39 +2.6
2,756,751 - alpA b2624 0.40 -0.6
2,756,758 + alpA b2624 0.43 -0.9
2,756,758 + alpA b2624 0.43 -0.6
2,756,768 + alpA b2624 0.48 -1.2
2,756,768 + alpA b2624 0.48 +4.9
2,756,808 + alpA b2624 0.67 +1.3
2,756,827 + alpA b2624 0.76 +2.0
2,756,827 + alpA b2624 0.76 +2.1
2,756,827 + alpA b2624 0.76 +2.0
2,756,838 + alpA b2624 0.81 +2.2
2,756,838 + alpA b2624 0.81 +0.5
2,756,838 + alpA b2624 0.81 -0.0
2,756,838 + alpA b2624 0.81 -3.5
2,756,838 + alpA b2624 0.81 +1.2
2,756,848 + alpA b2624 0.85 +0.2
2,756,848 + alpA b2624 0.85 +0.6
2,756,850 + alpA b2624 0.86 +1.9
2,756,850 + alpA b2624 0.86 -3.4
2,756,850 + alpA b2624 0.86 -1.6
2,756,862 + +0.6
2,756,893 + -0.9
2,756,906 + +1.1
2,756,909 + -1.3
2,756,916 + +5.4
2,756,918 + +0.0
2,756,918 + +2.6
2,756,918 + +2.4
2,756,920 + +0.3
2,757,018 - +1.6
2,757,084 - -0.4
2,757,088 - +2.6
2,757,089 - +0.0
2,757,089 - +1.0
2,757,092 - +1.0
2,757,093 - +2.6
2,757,093 - +2.6
2,757,107 - +2.6
2,757,184 - yfjI b2625 0.13 +2.6
2,757,521 - yfjI b2625 0.36 +2.6
2,757,523 - yfjI b2625 0.37 +1.6
2,757,575 + yfjI b2625 0.40 +2.6
2,757,776 + yfjI b2625 0.55 +2.6
2,757,780 + yfjI b2625 0.55 +3.2
2,757,791 + yfjI b2625 0.56 -2.3
2,757,791 + yfjI b2625 0.56 +2.6
2,757,791 + yfjI b2625 0.56 +0.6
2,757,838 + yfjI b2625 0.59 +2.6
2,757,838 + yfjI b2625 0.59 +2.6

Or see this region's nucleotide sequence