Strain Fitness in Escherichia coli BW25113 around b1430

Experiment: T7_phage 0.00015625 MOI TC3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttehA and tehB overlap by 4 nucleotidestehB and ydcL are separated by 301 nucleotides b1429: tehA - potassium-tellurite ethidium and proflavin transporter (NCBI), at 1,498,597 to 1,499,589 tehA b1430: tehB - predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI), at 1,499,586 to 1,500,179 tehB b1431: ydcL - predicted lipoprotein (NCBI), at 1,500,481 to 1,501,149 ydcL Position (kb) 1499 1500 1501Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1498.779 kb on - strand, within tehAat 1499.017 kb on - strand, within tehAat 1499.151 kb on + strand, within tehAat 1499.640 kb on + strandat 1499.650 kb on - strand, within tehBat 1499.699 kb on - strand, within tehBat 1499.709 kb on - strand, within tehBat 1499.726 kb on + strand, within tehBat 1499.741 kb on - strand, within tehBat 1499.831 kb on - strand, within tehBat 1499.859 kb on - strand, within tehBat 1499.991 kb on + strand, within tehBat 1499.991 kb on + strand, within tehBat 1500.069 kb on + strand, within tehBat 1500.069 kb on + strand, within tehBat 1500.113 kb on - strand, within tehBat 1500.128 kb on + strandat 1500.128 kb on + strandat 1500.191 kb on - strandat 1500.191 kb on - strandat 1500.496 kb on - strandat 1500.496 kb on - strandat 1500.540 kb on - strandat 1500.542 kb on - strandat 1500.685 kb on + strand, within ydcLat 1500.726 kb on + strand, within ydcLat 1500.762 kb on + strand, within ydcLat 1500.946 kb on + strand, within ydcLat 1501.107 kb on + strandat 1501.107 kb on + strandat 1501.126 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T7_phage 0.00015625 MOI TC3
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1,498,779 - tehA b1429 0.18 -0.5
1,499,017 - tehA b1429 0.42 -0.7
1,499,151 + tehA b1429 0.56 -0.3
1,499,640 + -0.0
1,499,650 - tehB b1430 0.11 +2.0
1,499,699 - tehB b1430 0.19 -0.5
1,499,709 - tehB b1430 0.21 +1.2
1,499,726 + tehB b1430 0.24 +0.2
1,499,741 - tehB b1430 0.26 +1.1
1,499,831 - tehB b1430 0.41 +0.9
1,499,859 - tehB b1430 0.46 +0.8
1,499,991 + tehB b1430 0.68 -0.1
1,499,991 + tehB b1430 0.68 -2.0
1,500,069 + tehB b1430 0.81 +1.6
1,500,069 + tehB b1430 0.81 -2.2
1,500,113 - tehB b1430 0.89 +1.5
1,500,128 + -3.0
1,500,128 + -3.3
1,500,191 - -0.1
1,500,191 - -0.5
1,500,496 - +0.1
1,500,496 - +0.2
1,500,540 - +0.9
1,500,542 - -3.3
1,500,685 + ydcL b1431 0.30 -2.4
1,500,726 + ydcL b1431 0.37 -2.5
1,500,762 + ydcL b1431 0.42 +0.3
1,500,946 + ydcL b1431 0.70 +0.5
1,501,107 + -3.1
1,501,107 + -2.0
1,501,126 - +0.8

Or see this region's nucleotide sequence