Strain Fitness in Pseudomonas putida KT2440 around PP_4872

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4871 and PP_4872 are separated by 120 nucleotidesPP_4872 and PP_4873 are separated by 315 nucleotides PP_4871: PP_4871 - putative lysine decarboxylase family protein, at 5,537,923 to 5,538,510 _4871 PP_4872: PP_4872 - putative enzyme of unknown function, at 5,538,631 to 5,540,985 _4872 PP_4873: PP_4873 - replicative DNA helicase (ATPase), at 5,541,301 to 5,542,698 _4873 Position (kb) 5538 5539 5540 5541Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5537.642 kb on + strandat 5537.643 kb on - strandat 5537.697 kb on + strandat 5537.697 kb on + strandat 5537.765 kb on + strandat 5537.765 kb on + strandat 5537.795 kb on - strandat 5537.931 kb on - strandat 5537.981 kb on - strandat 5538.040 kb on + strand, within PP_4871at 5538.041 kb on - strand, within PP_4871at 5538.041 kb on - strand, within PP_4871at 5538.256 kb on - strand, within PP_4871at 5538.343 kb on + strand, within PP_4871at 5538.372 kb on + strand, within PP_4871at 5538.372 kb on + strand, within PP_4871at 5538.483 kb on + strandat 5538.484 kb on - strandat 5538.620 kb on + strandat 5538.621 kb on - strandat 5538.621 kb on - strandat 5538.632 kb on + strandat 5538.878 kb on + strand, within PP_4872at 5538.878 kb on + strand, within PP_4872at 5538.879 kb on - strand, within PP_4872at 5538.879 kb on - strand, within PP_4872at 5538.879 kb on - strand, within PP_4872at 5538.882 kb on + strand, within PP_4872at 5538.883 kb on - strand, within PP_4872at 5538.883 kb on - strand, within PP_4872at 5538.883 kb on - strand, within PP_4872at 5538.883 kb on - strand, within PP_4872at 5538.883 kb on - strand, within PP_4872at 5539.067 kb on + strand, within PP_4872at 5539.068 kb on - strand, within PP_4872at 5539.103 kb on + strand, within PP_4872at 5539.103 kb on + strand, within PP_4872at 5539.103 kb on + strand, within PP_4872at 5539.103 kb on + strand, within PP_4872at 5539.103 kb on + strand, within PP_4872at 5539.104 kb on - strand, within PP_4872at 5539.104 kb on - strand, within PP_4872at 5539.104 kb on - strand, within PP_4872at 5539.136 kb on + strand, within PP_4872at 5539.136 kb on + strand, within PP_4872at 5539.136 kb on + strand, within PP_4872at 5539.137 kb on - strand, within PP_4872at 5539.147 kb on + strand, within PP_4872at 5539.148 kb on - strand, within PP_4872at 5539.238 kb on + strandat 5539.238 kb on + strand, within PP_4872at 5539.250 kb on + strand, within PP_4872at 5539.251 kb on - strand, within PP_4872at 5539.307 kb on + strand, within PP_4872at 5539.308 kb on - strand, within PP_4872at 5539.416 kb on - strand, within PP_4872at 5539.416 kb on - strand, within PP_4872at 5539.558 kb on + strand, within PP_4872at 5539.580 kb on + strand, within PP_4872at 5539.580 kb on + strand, within PP_4872at 5539.580 kb on + strand, within PP_4872at 5539.581 kb on - strandat 5539.581 kb on - strand, within PP_4872at 5539.581 kb on - strand, within PP_4872at 5539.581 kb on - strand, within PP_4872at 5539.581 kb on - strand, within PP_4872at 5539.616 kb on + strand, within PP_4872at 5539.616 kb on + strand, within PP_4872at 5539.616 kb on + strand, within PP_4872at 5539.764 kb on + strand, within PP_4872at 5539.765 kb on - strand, within PP_4872at 5539.765 kb on - strand, within PP_4872at 5539.865 kb on + strand, within PP_4872at 5539.865 kb on + strand, within PP_4872at 5539.883 kb on + strand, within PP_4872at 5539.883 kb on + strand, within PP_4872at 5539.883 kb on + strand, within PP_4872at 5539.883 kb on + strand, within PP_4872at 5539.883 kb on + strand, within PP_4872at 5540.016 kb on - strand, within PP_4872at 5540.016 kb on - strand, within PP_4872at 5540.016 kb on - strand, within PP_4872at 5540.186 kb on + strand, within PP_4872at 5540.187 kb on - strand, within PP_4872at 5540.187 kb on - strand, within PP_4872at 5540.226 kb on + strand, within PP_4872at 5540.246 kb on + strand, within PP_4872at 5540.246 kb on + strand, within PP_4872at 5540.435 kb on + strand, within PP_4872at 5540.436 kb on - strand, within PP_4872at 5540.495 kb on + strand, within PP_4872at 5540.495 kb on + strand, within PP_4872at 5540.496 kb on - strand, within PP_4872at 5540.496 kb on - strand, within PP_4872at 5540.496 kb on - strand, within PP_4872at 5540.519 kb on + strand, within PP_4872at 5540.519 kb on + strand, within PP_4872at 5540.519 kb on + strand, within PP_4872at 5540.520 kb on - strand, within PP_4872at 5540.520 kb on - strand, within PP_4872at 5540.520 kb on - strand, within PP_4872at 5540.570 kb on + strand, within PP_4872at 5540.571 kb on - strand, within PP_4872at 5540.571 kb on - strand, within PP_4872at 5540.606 kb on + strand, within PP_4872at 5540.606 kb on + strand, within PP_4872at 5540.607 kb on - strand, within PP_4872at 5540.786 kb on + strandat 5540.786 kb on + strandat 5540.787 kb on - strandat 5540.787 kb on - strandat 5540.787 kb on - strandat 5540.895 kb on - strandat 5540.903 kb on + strandat 5540.909 kb on + strandat 5540.910 kb on - strandat 5540.910 kb on - strandat 5540.976 kb on + strandat 5540.976 kb on + strandat 5540.976 kb on + strandat 5540.976 kb on + strandat 5540.979 kb on - strandat 5541.090 kb on + strandat 5541.275 kb on - strandat 5541.275 kb on - strandat 5541.275 kb on - strandat 5541.289 kb on + strandat 5541.298 kb on + strandat 5541.299 kb on - strandat 5541.299 kb on - strandat 5541.299 kb on - strandat 5541.302 kb on + strandat 5541.302 kb on + strandat 5541.303 kb on - strandat 5541.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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5,537,642 + +1.5
5,537,643 - +0.5
5,537,697 + -2.1
5,537,697 + -0.2
5,537,765 + +0.3
5,537,765 + -0.2
5,537,795 - +0.1
5,537,931 - -0.2
5,537,981 - +0.0
5,538,040 + PP_4871 0.20 -0.6
5,538,041 - PP_4871 0.20 -0.7
5,538,041 - PP_4871 0.20 -1.0
5,538,256 - PP_4871 0.57 -1.2
5,538,343 + PP_4871 0.71 -1.2
5,538,372 + PP_4871 0.76 +0.8
5,538,372 + PP_4871 0.76 -0.9
5,538,483 + +0.1
5,538,484 - +0.5
5,538,620 + -1.2
5,538,621 - +1.4
5,538,621 - -0.8
5,538,632 + -0.0
5,538,878 + PP_4872 0.10 +0.9
5,538,878 + PP_4872 0.10 -0.6
5,538,879 - PP_4872 0.11 -1.3
5,538,879 - PP_4872 0.11 +1.0
5,538,879 - PP_4872 0.11 -1.0
5,538,882 + PP_4872 0.11 -0.2
5,538,883 - PP_4872 0.11 -0.8
5,538,883 - PP_4872 0.11 +0.1
5,538,883 - PP_4872 0.11 +0.4
5,538,883 - PP_4872 0.11 +0.3
5,538,883 - PP_4872 0.11 -1.9
5,539,067 + PP_4872 0.19 -0.2
5,539,068 - PP_4872 0.19 -0.2
5,539,103 + PP_4872 0.20 +2.0
5,539,103 + PP_4872 0.20 +0.2
5,539,103 + PP_4872 0.20 +0.9
5,539,103 + PP_4872 0.20 +0.2
5,539,103 + PP_4872 0.20 +1.3
5,539,104 - PP_4872 0.20 +0.2
5,539,104 - PP_4872 0.20 +0.5
5,539,104 - PP_4872 0.20 -0.0
5,539,136 + PP_4872 0.21 +0.8
5,539,136 + PP_4872 0.21 +1.2
5,539,136 + PP_4872 0.21 -1.9
5,539,137 - PP_4872 0.21 +1.2
5,539,147 + PP_4872 0.22 +1.6
5,539,148 - PP_4872 0.22 -0.1
5,539,238 + +2.1
5,539,238 + PP_4872 0.26 +0.6
5,539,250 + PP_4872 0.26 +0.5
5,539,251 - PP_4872 0.26 +0.2
5,539,307 + PP_4872 0.29 +0.4
5,539,308 - PP_4872 0.29 +1.2
5,539,416 - PP_4872 0.33 -0.9
5,539,416 - PP_4872 0.33 -0.1
5,539,558 + PP_4872 0.39 +1.7
5,539,580 + PP_4872 0.40 +0.8
5,539,580 + PP_4872 0.40 -0.5
5,539,580 + PP_4872 0.40 -0.6
5,539,581 - +1.3
5,539,581 - PP_4872 0.40 -1.3
5,539,581 - PP_4872 0.40 -0.9
5,539,581 - PP_4872 0.40 +0.6
5,539,581 - PP_4872 0.40 +0.3
5,539,616 + PP_4872 0.42 -0.6
5,539,616 + PP_4872 0.42 +0.1
5,539,616 + PP_4872 0.42 -0.9
5,539,764 + PP_4872 0.48 -1.7
5,539,765 - PP_4872 0.48 -0.8
5,539,765 - PP_4872 0.48 +0.8
5,539,865 + PP_4872 0.52 -0.9
5,539,865 + PP_4872 0.52 +1.1
5,539,883 + PP_4872 0.53 -0.1
5,539,883 + PP_4872 0.53 +0.7
5,539,883 + PP_4872 0.53 -0.2
5,539,883 + PP_4872 0.53 -1.6
5,539,883 + PP_4872 0.53 +0.6
5,540,016 - PP_4872 0.59 +0.7
5,540,016 - PP_4872 0.59 +0.7
5,540,016 - PP_4872 0.59 +0.7
5,540,186 + PP_4872 0.66 +0.7
5,540,187 - PP_4872 0.66 +0.4
5,540,187 - PP_4872 0.66 -0.6
5,540,226 + PP_4872 0.68 +1.3
5,540,246 + PP_4872 0.69 +0.4
5,540,246 + PP_4872 0.69 -0.9
5,540,435 + PP_4872 0.77 -0.5
5,540,436 - PP_4872 0.77 +1.2
5,540,495 + PP_4872 0.79 +2.7
5,540,495 + PP_4872 0.79 +0.1
5,540,496 - PP_4872 0.79 +0.4
5,540,496 - PP_4872 0.79 +1.3
5,540,496 - PP_4872 0.79 -0.3
5,540,519 + PP_4872 0.80 +1.5
5,540,519 + PP_4872 0.80 -0.6
5,540,519 + PP_4872 0.80 +0.8
5,540,520 - PP_4872 0.80 +1.5
5,540,520 - PP_4872 0.80 +0.4
5,540,520 - PP_4872 0.80 +0.2
5,540,570 + PP_4872 0.82 -0.4
5,540,571 - PP_4872 0.82 -0.4
5,540,571 - PP_4872 0.82 +0.9
5,540,606 + PP_4872 0.84 +1.0
5,540,606 + PP_4872 0.84 +0.5
5,540,607 - PP_4872 0.84 +0.8
5,540,786 + +0.3
5,540,786 + -1.4
5,540,787 - -0.5
5,540,787 - -1.8
5,540,787 - +4.1
5,540,895 - +0.0
5,540,903 + -0.0
5,540,909 + +1.1
5,540,910 - -0.7
5,540,910 - -0.6
5,540,976 + +0.9
5,540,976 + +0.6
5,540,976 + -0.5
5,540,976 + +0.1
5,540,979 - -0.3
5,541,090 + -0.0
5,541,275 - +1.0
5,541,275 - +0.1
5,541,275 - +1.1
5,541,289 + +0.3
5,541,298 + -0.2
5,541,299 - +1.1
5,541,299 - +1.1
5,541,299 - -0.1
5,541,302 + +0.7
5,541,302 + +0.5
5,541,303 - -0.6
5,541,324 - -0.3

Or see this region's nucleotide sequence