Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0543 and PP_0544 are separated by 46 nucleotides PP_0544 and PP_0545 are separated by 227 nucleotides
PP_0543: PP_0543 - ethanolamine ammonia-lyase, alpha-subunit, at 628,803 to 630,197
_0543
PP_0544: PP_0544 - Ethanolamine transporter, at 630,244 to 631,692
_0544
PP_0545: PP_0545 - aldehyde dehydrogenase, at 631,920 to 633,440
_0545
Position (kb) 630
631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 629.257 kb on + strand, within PP_0543 at 629.258 kb on - strand, within PP_0543 at 629.258 kb on - strand, within PP_0543 at 629.338 kb on + strand, within PP_0543 at 629.389 kb on + strand, within PP_0543 at 629.389 kb on + strand, within PP_0543 at 629.389 kb on + strand, within PP_0543 at 629.390 kb on - strand, within PP_0543 at 629.549 kb on - strand, within PP_0543 at 629.648 kb on - strand, within PP_0543 at 629.648 kb on - strand, within PP_0543 at 630.197 kb on + strand at 630.323 kb on + strand at 630.324 kb on - strand at 630.324 kb on - strand at 630.335 kb on + strand at 630.336 kb on - strand at 630.336 kb on - strand at 630.336 kb on - strand at 630.343 kb on + strand at 630.344 kb on - strand at 630.348 kb on - strand at 630.353 kb on + strand at 630.353 kb on + strand at 630.353 kb on + strand at 630.353 kb on + strand at 630.354 kb on - strand at 630.467 kb on + strand, within PP_0544 at 630.530 kb on + strand, within PP_0544 at 630.530 kb on + strand, within PP_0544 at 630.530 kb on + strand, within PP_0544 at 630.531 kb on - strand, within PP_0544 at 630.531 kb on - strand, within PP_0544 at 630.531 kb on - strand, within PP_0544 at 630.714 kb on - strand, within PP_0544 at 630.714 kb on - strand, within PP_0544 at 630.714 kb on - strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.719 kb on + strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.720 kb on - strand, within PP_0544 at 630.800 kb on + strand, within PP_0544 at 630.801 kb on - strand, within PP_0544 at 631.013 kb on + strand, within PP_0544 at 631.130 kb on - strand, within PP_0544 at 631.232 kb on + strand, within PP_0544 at 631.233 kb on - strand at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.245 kb on - strand, within PP_0544 at 631.394 kb on + strand, within PP_0544 at 631.457 kb on + strand, within PP_0544 at 631.457 kb on + strand at 631.458 kb on - strand, within PP_0544 at 631.458 kb on - strand, within PP_0544 at 631.535 kb on + strand, within PP_0544 at 631.554 kb on - strand at 631.554 kb on - strand at 631.580 kb on - strand at 631.623 kb on - strand at 631.692 kb on + strand at 631.692 kb on + strand at 631.850 kb on + strand at 631.850 kb on + strand at 631.851 kb on - strand at 631.884 kb on + strand at 631.922 kb on - strand at 631.949 kb on - strand at 631.949 kb on - strand at 631.978 kb on + strand at 631.978 kb on + strand at 632.057 kb on - strand at 632.065 kb on + strand at 632.066 kb on - strand at 632.066 kb on - strand at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.291 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 629,257 + PP_0543 0.33 -1.2 629,258 - PP_0543 0.33 +0.5 629,258 - PP_0543 0.33 +1.2 629,338 + PP_0543 0.38 +1.1 629,389 + PP_0543 0.42 +1.3 629,389 + PP_0543 0.42 +1.5 629,389 + PP_0543 0.42 -0.8 629,390 - PP_0543 0.42 -0.8 629,549 - PP_0543 0.53 +1.0 629,648 - PP_0543 0.61 +1.3 629,648 - PP_0543 0.61 +0.1 630,197 + +1.6 630,323 + +0.8 630,324 - -0.2 630,324 - +1.0 630,335 + -1.6 630,336 - +0.2 630,336 - +1.0 630,336 - +1.4 630,343 + +2.6 630,344 - +0.6 630,348 - +0.0 630,353 + +1.0 630,353 + -2.2 630,353 + +0.7 630,353 + -1.0 630,354 - -0.7 630,467 + PP_0544 0.15 +1.7 630,530 + PP_0544 0.20 +1.9 630,530 + PP_0544 0.20 +0.0 630,530 + PP_0544 0.20 +1.1 630,531 - PP_0544 0.20 +0.7 630,531 - PP_0544 0.20 -0.4 630,531 - PP_0544 0.20 +0.4 630,714 - PP_0544 0.32 -0.5 630,714 - PP_0544 0.32 -0.2 630,714 - PP_0544 0.32 -0.4 630,719 + PP_0544 0.33 +1.4 630,719 + PP_0544 0.33 -0.9 630,719 + PP_0544 0.33 +1.0 630,719 + PP_0544 0.33 +1.1 630,719 + PP_0544 0.33 +1.0 630,719 + PP_0544 0.33 -0.7 630,719 + PP_0544 0.33 +0.1 630,719 + PP_0544 0.33 -1.0 630,719 + PP_0544 0.33 -0.5 630,719 + PP_0544 0.33 -0.7 630,719 + PP_0544 0.33 -1.1 630,719 + PP_0544 0.33 +0.8 630,720 - PP_0544 0.33 +0.0 630,720 - PP_0544 0.33 +1.0 630,720 - PP_0544 0.33 +1.6 630,720 - PP_0544 0.33 +0.8 630,720 - PP_0544 0.33 +0.3 630,720 - PP_0544 0.33 +0.1 630,720 - PP_0544 0.33 -2.1 630,720 - PP_0544 0.33 -0.1 630,720 - PP_0544 0.33 +0.6 630,720 - PP_0544 0.33 +0.3 630,720 - +2.0 630,720 - PP_0544 0.33 +0.9 630,720 - PP_0544 0.33 +0.8 630,720 - PP_0544 0.33 +0.0 630,800 + PP_0544 0.38 +0.6 630,801 - PP_0544 0.38 -0.8 631,013 + PP_0544 0.53 +0.8 631,130 - PP_0544 0.61 -0.1 631,232 + PP_0544 0.68 +0.6 631,233 - +1.3 631,244 + PP_0544 0.69 -2.9 631,244 + PP_0544 0.69 -0.1 631,244 + PP_0544 0.69 +0.4 631,244 + PP_0544 0.69 +0.6 631,245 - PP_0544 0.69 -1.3 631,394 + PP_0544 0.79 +0.2 631,457 + PP_0544 0.84 +0.8 631,457 + +2.0 631,458 - PP_0544 0.84 -0.4 631,458 - PP_0544 0.84 +0.2 631,535 + PP_0544 0.89 +0.9 631,554 - -0.1 631,554 - -1.3 631,580 - -1.1 631,623 - +0.3 631,692 + -1.1 631,692 + +0.9 631,850 + -0.4 631,850 + -1.2 631,851 - +0.6 631,884 + -1.2 631,922 - +1.2 631,949 - +0.5 631,949 - -0.0 631,978 + -1.0 631,978 + +1.3 632,057 - +2.6 632,065 + -0.0 632,066 - +1.0 632,066 - +1.8 632,290 + PP_0545 0.24 +1.5 632,290 + PP_0545 0.24 -2.0 632,290 + PP_0545 0.24 -0.4 632,290 + PP_0545 0.24 -1.2 632,291 - PP_0545 0.24 -1.3 632,378 - PP_0545 0.30 +0.6 632,378 - PP_0545 0.30 +0.2 632,378 - PP_0545 0.30 +0.8
Or see this region's nucleotide sequence