Experiment: T7_phage 0.0015625 MOI TC2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeiC and fruA are separated by 422 nucleotides fruA and fruK are separated by 16 nucleotides fruK and fruB overlap by 1 nucleotides
b2166: yeiC - predicted kinase (NCBI), at 2,256,377 to 2,257,318
yeiC
b2167: fruA - fused fructose-specific PTS enzymes: IIBcomponent/IIC components (NCBI), at 2,257,741 to 2,259,432
fruA
b2168: fruK - 1-phosphofructokinase (NCBI), at 2,259,449 to 2,260,387
fruK
b2169: fruB - fused fructose-specific PTS enzymes: IIA component/HPr component (NCBI), at 2,260,387 to 2,261,517
fruB
Position (kb)
2257
2258
2259
2260 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2256.745 kb on - strand, within yeiC at 2256.762 kb on + strand, within yeiC at 2256.769 kb on - strand, within yeiC at 2256.782 kb on + strand, within yeiC at 2256.791 kb on + strand, within yeiC at 2256.809 kb on + strand, within yeiC at 2256.838 kb on + strand, within yeiC at 2256.843 kb on + strand, within yeiC at 2256.858 kb on + strand, within yeiC at 2256.869 kb on + strand, within yeiC at 2256.888 kb on + strand, within yeiC at 2256.888 kb on + strand, within yeiC at 2256.920 kb on - strand, within yeiC at 2256.937 kb on + strand, within yeiC at 2257.064 kb on - strand, within yeiC at 2257.105 kb on - strand, within yeiC at 2257.105 kb on - strand, within yeiC at 2257.109 kb on - strand, within yeiC at 2257.121 kb on - strand, within yeiC at 2257.165 kb on - strand, within yeiC at 2257.182 kb on + strand, within yeiC at 2257.182 kb on + strand, within yeiC at 2257.200 kb on - strand, within yeiC at 2257.200 kb on - strand, within yeiC at 2257.200 kb on - strand, within yeiC at 2257.309 kb on - strand at 2257.333 kb on - strand at 2257.333 kb on - strand at 2257.368 kb on - strand at 2257.368 kb on - strand at 2257.402 kb on - strand at 2257.413 kb on - strand at 2257.428 kb on - strand at 2257.433 kb on - strand at 2257.433 kb on - strand at 2257.481 kb on - strand at 2257.483 kb on + strand at 2257.549 kb on - strand at 2257.549 kb on - strand at 2257.549 kb on - strand at 2257.554 kb on - strand at 2257.591 kb on - strand at 2257.597 kb on - strand at 2257.597 kb on - strand at 2257.633 kb on + strand at 2257.734 kb on - strand at 2257.748 kb on + strand at 2257.748 kb on + strand at 2257.795 kb on - strand at 2257.832 kb on + strand at 2257.893 kb on - strand at 2257.901 kb on - strand at 2257.965 kb on - strand, within fruA at 2257.970 kb on - strand, within fruA at 2257.970 kb on - strand, within fruA at 2258.157 kb on + strand, within fruA at 2258.157 kb on + strand, within fruA at 2258.170 kb on - strand, within fruA at 2258.220 kb on - strand, within fruA at 2258.220 kb on - strand, within fruA at 2258.402 kb on + strand, within fruA at 2258.408 kb on - strand, within fruA at 2258.408 kb on - strand, within fruA at 2258.408 kb on - strand, within fruA at 2258.408 kb on - strand, within fruA at 2258.410 kb on - strand, within fruA at 2258.450 kb on + strand, within fruA at 2258.529 kb on - strand, within fruA at 2258.529 kb on - strand, within fruA at 2258.661 kb on + strand, within fruA at 2258.756 kb on - strand, within fruA at 2258.760 kb on - strand, within fruA at 2258.845 kb on - strand, within fruA at 2258.893 kb on - strand, within fruA at 2258.970 kb on + strand, within fruA at 2259.012 kb on + strand, within fruA at 2259.089 kb on - strand, within fruA at 2259.089 kb on - strand, within fruA at 2259.094 kb on - strand, within fruA at 2259.106 kb on + strand, within fruA at 2259.184 kb on + strand, within fruA at 2259.184 kb on + strand, within fruA at 2259.197 kb on + strand, within fruA at 2259.215 kb on - strand, within fruA at 2259.380 kb on + strand at 2259.507 kb on + strand at 2259.951 kb on - strand, within fruK at 2260.134 kb on + strand, within fruK at 2260.153 kb on + strand, within fruK at 2260.398 kb on + strand at 2260.398 kb on + strand at 2260.412 kb on - strand at 2260.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction T7_phage 0.0015625 MOI TC2 remove 2,256,745 - yeiC b2166 0.39 +1.3 2,256,762 + yeiC b2166 0.41 -1.3 2,256,769 - yeiC b2166 0.42 -0.7 2,256,782 + yeiC b2166 0.43 +1.9 2,256,791 + yeiC b2166 0.44 -1.2 2,256,809 + yeiC b2166 0.46 -1.0 2,256,838 + yeiC b2166 0.49 +0.6 2,256,843 + yeiC b2166 0.49 +1.9 2,256,858 + yeiC b2166 0.51 +0.1 2,256,869 + yeiC b2166 0.52 +0.9 2,256,888 + yeiC b2166 0.54 -0.3 2,256,888 + yeiC b2166 0.54 +0.1 2,256,920 - yeiC b2166 0.58 +2.9 2,256,937 + yeiC b2166 0.59 +0.3 2,257,064 - yeiC b2166 0.73 -2.1 2,257,105 - yeiC b2166 0.77 -0.6 2,257,105 - yeiC b2166 0.77 +0.6 2,257,109 - yeiC b2166 0.78 -1.5 2,257,121 - yeiC b2166 0.79 +3.6 2,257,165 - yeiC b2166 0.84 +0.3 2,257,182 + yeiC b2166 0.85 +2.9 2,257,182 + yeiC b2166 0.85 +5.5 2,257,200 - yeiC b2166 0.87 -0.7 2,257,200 - yeiC b2166 0.87 +0.3 2,257,200 - yeiC b2166 0.87 -1.6 2,257,309 - +0.5 2,257,333 - +2.0 2,257,333 - -0.1 2,257,368 - +0.3 2,257,368 - +1.0 2,257,402 - -0.7 2,257,413 - -0.6 2,257,428 - -2.0 2,257,433 - -1.5 2,257,433 - -1.6 2,257,481 - -0.6 2,257,483 + -0.9 2,257,549 - +0.8 2,257,549 - -0.4 2,257,549 - -0.9 2,257,554 - +1.3 2,257,591 - +2.7 2,257,597 - +0.3 2,257,597 - +2.3 2,257,633 + -1.8 2,257,734 - -0.6 2,257,748 + -2.1 2,257,748 + +1.0 2,257,795 - -2.9 2,257,832 + -0.6 2,257,893 - +0.1 2,257,901 - +0.8 2,257,965 - fruA b2167 0.13 -1.7 2,257,970 - fruA b2167 0.14 -1.4 2,257,970 - fruA b2167 0.14 +0.8 2,258,157 + fruA b2167 0.25 +1.9 2,258,157 + fruA b2167 0.25 +0.9 2,258,170 - fruA b2167 0.25 -0.9 2,258,220 - fruA b2167 0.28 -3.4 2,258,220 - fruA b2167 0.28 -2.3 2,258,402 + fruA b2167 0.39 +1.0 2,258,408 - fruA b2167 0.39 +0.1 2,258,408 - fruA b2167 0.39 -1.3 2,258,408 - fruA b2167 0.39 +1.6 2,258,408 - fruA b2167 0.39 -3.3 2,258,410 - fruA b2167 0.40 -3.5 2,258,450 + fruA b2167 0.42 +0.9 2,258,529 - fruA b2167 0.47 -2.0 2,258,529 - fruA b2167 0.47 +0.3 2,258,661 + fruA b2167 0.54 -0.6 2,258,756 - fruA b2167 0.60 -0.3 2,258,760 - fruA b2167 0.60 +0.0 2,258,845 - fruA b2167 0.65 +1.9 2,258,893 - fruA b2167 0.68 -3.2 2,258,970 + fruA b2167 0.73 -3.1 2,259,012 + fruA b2167 0.75 +0.1 2,259,089 - fruA b2167 0.80 -3.0 2,259,089 - fruA b2167 0.80 +0.1 2,259,094 - fruA b2167 0.80 -0.9 2,259,106 + fruA b2167 0.81 -3.4 2,259,184 + fruA b2167 0.85 -2.5 2,259,184 + fruA b2167 0.85 -0.6 2,259,197 + fruA b2167 0.86 +0.6 2,259,215 - fruA b2167 0.87 -1.7 2,259,380 + -3.5 2,259,507 + +0.7 2,259,951 - fruK b2168 0.53 -1.8 2,260,134 + fruK b2168 0.73 -1.6 2,260,153 + fruK b2168 0.75 -0.1 2,260,398 + +0.5 2,260,398 + -3.2 2,260,412 - -2.3 2,260,416 - -2.2
Or see this region's nucleotide sequence