Experiment: T7_phage 0.0000015625 MOI TC1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yibJ and yibG are separated by 11 nucleotides yibG and yibS are separated by 0 nucleotides yibS and yibW are separated by 1 nucleotides yibW and yibV are separated by 369 nucleotides yibV and yibU are separated by 164 nucleotides
b3595: yibJ - predicted Rhs-family protein (RefSeq), at 3,765,244 to 3,766,188
yibJ
b3596: yibG - hypothetical protein (NCBI), at 3,766,200 to 3,766,661
yibG
b4650: yibS - no description, at 3,766,662 to 3,766,913
yibS
b4651: yibW - no description, at 3,766,915 to 3,766,998
yibW
b4615: yibV - hypothetical protein, no homologs (RefSeq), at 3,767,368 to 3,767,806
yibV
b4652: yibU - no description, at 3,767,971 to 3,768,169
yibU
Position (kb)
3766
3767 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3765.985 kb on - strand, within yibJ at 3765.994 kb on - strand, within yibJ at 3765.994 kb on - strand, within yibJ at 3765.994 kb on - strand, within yibJ at 3765.996 kb on - strand, within yibJ at 3766.001 kb on - strand, within yibJ at 3766.005 kb on - strand, within yibJ at 3766.117 kb on + strand at 3766.691 kb on + strand, within yibS at 3766.713 kb on - strand, within yibS at 3766.715 kb on + strand, within yibS at 3766.715 kb on + strand, within yibS at 3766.754 kb on - strand, within yibS at 3766.757 kb on + strand, within yibS at 3766.773 kb on - strand, within yibS at 3766.780 kb on + strand, within yibS at 3766.780 kb on + strand, within yibS at 3766.840 kb on + strand, within yibS at 3766.840 kb on + strand, within yibS at 3766.840 kb on + strand, within yibS at 3766.840 kb on + strand, within yibS at 3766.841 kb on + strand, within yibS at 3766.856 kb on + strand, within yibS at 3766.858 kb on + strand, within yibS at 3766.858 kb on + strand, within yibS at 3766.858 kb on + strand, within yibS at 3766.859 kb on + strand, within yibS at 3766.878 kb on + strand, within yibS at 3766.878 kb on + strand, within yibS at 3766.892 kb on + strand at 3766.900 kb on + strand at 3766.903 kb on + strand at 3766.903 kb on + strand at 3766.932 kb on + strand, within yibW at 3766.935 kb on + strand, within yibW at 3767.931 kb on - strand at 3767.931 kb on - strand at 3767.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction T7_phage 0.0000015625 MOI TC1 remove 3,765,985 - yibJ b3595 0.78 +2.8 3,765,994 - yibJ b3595 0.79 +1.8 3,765,994 - yibJ b3595 0.79 +2.8 3,765,994 - yibJ b3595 0.79 +1.2 3,765,996 - yibJ b3595 0.80 +2.8 3,766,001 - yibJ b3595 0.80 +2.8 3,766,005 - yibJ b3595 0.81 +2.8 3,766,117 + +2.8 3,766,691 + yibS b4650 0.12 +2.8 3,766,713 - yibS b4650 0.20 +2.8 3,766,715 + yibS b4650 0.21 +2.8 3,766,715 + yibS b4650 0.21 +2.8 3,766,754 - yibS b4650 0.37 -1.2 3,766,757 + yibS b4650 0.38 +1.2 3,766,773 - yibS b4650 0.44 +2.8 3,766,780 + yibS b4650 0.47 +1.2 3,766,780 + yibS b4650 0.47 +1.8 3,766,840 + yibS b4650 0.71 +1.4 3,766,840 + yibS b4650 0.71 +0.4 3,766,840 + yibS b4650 0.71 +1.3 3,766,840 + yibS b4650 0.71 +0.2 3,766,841 + yibS b4650 0.71 -0.4 3,766,856 + yibS b4650 0.77 +1.0 3,766,858 + yibS b4650 0.78 -0.5 3,766,858 + yibS b4650 0.78 +1.8 3,766,858 + yibS b4650 0.78 +1.2 3,766,859 + yibS b4650 0.78 -1.0 3,766,878 + yibS b4650 0.86 +2.8 3,766,878 + yibS b4650 0.86 +1.8 3,766,892 + -0.2 3,766,900 + +0.9 3,766,903 + +1.4 3,766,903 + +0.5 3,766,932 + yibW b4651 0.20 +0.5 3,766,935 + yibW b4651 0.24 +1.2 3,767,931 - +1.2 3,767,931 - +0.8 3,767,938 - +1.4
Or see this region's nucleotide sequence