Experiment: T7_phage 0.0000015625 MOI TC1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cmtA and cmtB are separated by 27 nucleotides cmtB and tktA are separated by 313 nucleotides
b2933: cmtA - predicted fused mannitol-specific PTS enzymes: IIB component/IIC component (NCBI), at 3,075,493 to 3,076,881
cmtA
b2934: cmtB - predicted mannitol-specific enzyme IIA component of PTS (NCBI), at 3,076,909 to 3,077,352
cmtB
b2935: tktA - transketolase 1, thiamin-binding (NCBI), at 3,077,666 to 3,079,657
tktA
Position (kb)
3076
3077
3078 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3075.912 kb on - strand, within cmtA at 3075.916 kb on - strand, within cmtA at 3075.918 kb on - strand, within cmtA at 3075.926 kb on - strand, within cmtA at 3075.926 kb on - strand, within cmtA at 3075.943 kb on + strand, within cmtA at 3075.971 kb on - strand, within cmtA at 3076.009 kb on - strand, within cmtA at 3076.016 kb on - strand, within cmtA at 3076.016 kb on - strand, within cmtA at 3076.034 kb on - strand, within cmtA at 3076.037 kb on + strand, within cmtA at 3076.037 kb on + strand, within cmtA at 3076.037 kb on + strand, within cmtA at 3076.045 kb on - strand, within cmtA at 3076.045 kb on - strand, within cmtA at 3076.051 kb on - strand, within cmtA at 3076.051 kb on - strand, within cmtA at 3076.084 kb on + strand, within cmtA at 3076.122 kb on - strand, within cmtA at 3076.165 kb on - strand, within cmtA at 3076.167 kb on + strand, within cmtA at 3076.167 kb on + strand, within cmtA at 3076.180 kb on - strand, within cmtA at 3076.195 kb on + strand, within cmtA at 3076.195 kb on + strand, within cmtA at 3076.200 kb on + strand, within cmtA at 3076.217 kb on + strand, within cmtA at 3076.225 kb on - strand, within cmtA at 3076.226 kb on - strand, within cmtA at 3076.230 kb on + strand, within cmtA at 3076.237 kb on + strand, within cmtA at 3076.244 kb on + strand, within cmtA at 3076.244 kb on + strand, within cmtA at 3076.281 kb on - strand, within cmtA at 3076.317 kb on - strand, within cmtA at 3076.340 kb on - strand, within cmtA at 3076.351 kb on - strand, within cmtA at 3076.351 kb on - strand, within cmtA at 3076.355 kb on + strand, within cmtA at 3076.360 kb on - strand, within cmtA at 3076.363 kb on + strand, within cmtA at 3076.363 kb on + strand, within cmtA at 3076.385 kb on - strand, within cmtA at 3076.386 kb on - strand, within cmtA at 3076.390 kb on - strand, within cmtA at 3076.426 kb on + strand, within cmtA at 3076.449 kb on + strand, within cmtA at 3076.449 kb on + strand, within cmtA at 3076.512 kb on + strand, within cmtA at 3076.566 kb on + strand, within cmtA at 3076.566 kb on + strand, within cmtA at 3076.566 kb on + strand, within cmtA at 3076.574 kb on - strand, within cmtA at 3076.598 kb on - strand, within cmtA at 3076.620 kb on + strand, within cmtA at 3076.630 kb on + strand, within cmtA at 3076.630 kb on - strand, within cmtA at 3076.636 kb on + strand, within cmtA at 3076.663 kb on + strand, within cmtA at 3076.668 kb on + strand, within cmtA at 3076.668 kb on + strand, within cmtA at 3076.676 kb on + strand, within cmtA at 3076.676 kb on + strand, within cmtA at 3076.676 kb on + strand, within cmtA at 3076.677 kb on + strand, within cmtA at 3076.677 kb on + strand, within cmtA at 3076.701 kb on + strand, within cmtA at 3076.750 kb on + strand at 3076.750 kb on + strand at 3076.754 kb on + strand at 3076.754 kb on + strand at 3076.813 kb on - strand at 3076.837 kb on + strand at 3076.837 kb on - strand at 3076.841 kb on + strand at 3076.853 kb on + strand at 3076.854 kb on + strand at 3076.854 kb on + strand at 3077.141 kb on - strand, within cmtB at 3077.180 kb on + strand, within cmtB at 3077.305 kb on + strand, within cmtB at 3077.305 kb on + strand, within cmtB at 3077.438 kb on - strand at 3077.496 kb on - strand at 3077.496 kb on - strand at 3077.516 kb on + strand at 3077.531 kb on + strand at 3077.531 kb on + strand at 3077.576 kb on + strand at 3077.596 kb on - strand at 3077.596 kb on - strand at 3077.617 kb on - strand at 3077.695 kb on - strand at 3077.707 kb on - strand at 3077.717 kb on - strand at 3077.778 kb on - strand at 3077.778 kb on - strand at 3078.018 kb on + strand, within tktA at 3078.067 kb on + strand, within tktA at 3078.104 kb on + strand, within tktA at 3078.233 kb on + strand, within tktA
Per-strain Table
Position Strand Gene LocusTag Fraction T7_phage 0.0000015625 MOI TC1 remove 3,075,912 - cmtA b2933 0.30 +0.3 3,075,916 - cmtA b2933 0.30 -0.0 3,075,918 - cmtA b2933 0.31 -0.0 3,075,926 - cmtA b2933 0.31 -0.0 3,075,926 - cmtA b2933 0.31 -1.2 3,075,943 + cmtA b2933 0.32 -0.4 3,075,971 - cmtA b2933 0.34 -0.2 3,076,009 - cmtA b2933 0.37 -1.0 3,076,016 - cmtA b2933 0.38 +1.5 3,076,016 - cmtA b2933 0.38 +0.3 3,076,034 - cmtA b2933 0.39 +0.9 3,076,037 + cmtA b2933 0.39 +0.1 3,076,037 + cmtA b2933 0.39 -0.2 3,076,037 + cmtA b2933 0.39 -0.5 3,076,045 - cmtA b2933 0.40 -0.8 3,076,045 - cmtA b2933 0.40 +0.7 3,076,051 - cmtA b2933 0.40 +0.0 3,076,051 - cmtA b2933 0.40 -0.4 3,076,084 + cmtA b2933 0.43 +0.3 3,076,122 - cmtA b2933 0.45 -0.2 3,076,165 - cmtA b2933 0.48 -0.5 3,076,167 + cmtA b2933 0.49 +0.1 3,076,167 + cmtA b2933 0.49 -1.6 3,076,180 - cmtA b2933 0.49 +0.5 3,076,195 + cmtA b2933 0.51 +0.4 3,076,195 + cmtA b2933 0.51 -1.0 3,076,200 + cmtA b2933 0.51 +0.3 3,076,217 + cmtA b2933 0.52 -0.2 3,076,225 - cmtA b2933 0.53 +0.3 3,076,226 - cmtA b2933 0.53 -1.4 3,076,230 + cmtA b2933 0.53 +0.1 3,076,237 + cmtA b2933 0.54 +0.2 3,076,244 + cmtA b2933 0.54 -0.3 3,076,244 + cmtA b2933 0.54 -0.7 3,076,281 - cmtA b2933 0.57 +0.9 3,076,317 - cmtA b2933 0.59 +0.2 3,076,340 - cmtA b2933 0.61 -0.3 3,076,351 - cmtA b2933 0.62 -0.5 3,076,351 - cmtA b2933 0.62 +0.1 3,076,355 + cmtA b2933 0.62 -0.0 3,076,360 - cmtA b2933 0.62 +0.8 3,076,363 + cmtA b2933 0.63 -1.7 3,076,363 + cmtA b2933 0.63 +0.1 3,076,385 - cmtA b2933 0.64 -0.6 3,076,386 - cmtA b2933 0.64 +0.1 3,076,390 - cmtA b2933 0.65 +0.2 3,076,426 + cmtA b2933 0.67 +1.5 3,076,449 + cmtA b2933 0.69 +0.2 3,076,449 + cmtA b2933 0.69 -1.6 3,076,512 + cmtA b2933 0.73 +0.5 3,076,566 + cmtA b2933 0.77 +0.5 3,076,566 + cmtA b2933 0.77 +1.0 3,076,566 + cmtA b2933 0.77 +0.8 3,076,574 - cmtA b2933 0.78 -0.0 3,076,598 - cmtA b2933 0.80 +0.2 3,076,620 + cmtA b2933 0.81 +0.0 3,076,630 + cmtA b2933 0.82 +0.9 3,076,630 - cmtA b2933 0.82 +0.4 3,076,636 + cmtA b2933 0.82 +0.2 3,076,663 + cmtA b2933 0.84 +0.5 3,076,668 + cmtA b2933 0.85 -0.3 3,076,668 + cmtA b2933 0.85 -0.5 3,076,676 + cmtA b2933 0.85 -0.2 3,076,676 + cmtA b2933 0.85 +0.6 3,076,676 + cmtA b2933 0.85 +0.5 3,076,677 + cmtA b2933 0.85 +0.0 3,076,677 + cmtA b2933 0.85 +0.5 3,076,701 + cmtA b2933 0.87 +0.1 3,076,750 + -0.3 3,076,750 + -0.3 3,076,754 + -0.7 3,076,754 + -1.0 3,076,813 - +2.5 3,076,837 + +0.2 3,076,837 - +1.7 3,076,841 + +1.1 3,076,853 + +1.9 3,076,854 + +1.5 3,076,854 + +0.9 3,077,141 - cmtB b2934 0.52 +2.5 3,077,180 + cmtB b2934 0.61 +2.5 3,077,305 + cmtB b2934 0.89 +0.9 3,077,305 + cmtB b2934 0.89 +0.1 3,077,438 - -0.5 3,077,496 - +0.1 3,077,496 - +0.0 3,077,516 + +0.5 3,077,531 + +0.5 3,077,531 + -1.4 3,077,576 + -0.9 3,077,596 - +0.5 3,077,596 - -2.2 3,077,617 - -1.2 3,077,695 - +0.0 3,077,707 - -0.1 3,077,717 - +0.2 3,077,778 - +1.5 3,077,778 - +0.1 3,078,018 + tktA b2935 0.18 +0.9 3,078,067 + tktA b2935 0.20 -1.0 3,078,104 + tktA b2935 0.22 -1.3 3,078,233 + tktA b2935 0.28 +1.5
Or see this region's nucleotide sequence