Experiment: T7_phage 0.0000015625 MOI TC1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeiT and yeiA overlap by 7 nucleotides yeiA and mglC are separated by 242 nucleotides
b2146: yeiT - predicted oxidoreductase (NCBI), at 2,232,055 to 2,233,293
yeiT
b2147: yeiA - putative oxidoreductase (VIMSS), at 2,233,287 to 2,234,522
yeiA
b2148: mglC - beta-methylgalactoside transporter inner membrane component (NCBI), at 2,234,765 to 2,235,775
mglC
Position (kb)
2233
2234
2235 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2232.311 kb on + strand, within yeiT at 2232.311 kb on + strand, within yeiT at 2232.326 kb on + strand, within yeiT at 2232.326 kb on + strand, within yeiT at 2232.326 kb on + strand, within yeiT at 2232.333 kb on - strand, within yeiT at 2232.333 kb on - strand, within yeiT at 2232.346 kb on + strand, within yeiT at 2232.473 kb on + strand, within yeiT at 2232.575 kb on + strand, within yeiT at 2232.643 kb on + strand, within yeiT at 2232.643 kb on + strand, within yeiT at 2232.699 kb on - strand, within yeiT at 2232.699 kb on - strand, within yeiT at 2232.719 kb on + strand, within yeiT at 2232.861 kb on - strand, within yeiT at 2232.995 kb on - strand, within yeiT at 2233.038 kb on + strand, within yeiT at 2233.102 kb on + strand, within yeiT at 2233.102 kb on + strand, within yeiT at 2233.125 kb on - strand, within yeiT at 2233.131 kb on + strand, within yeiT at 2233.283 kb on - strand at 2233.422 kb on - strand, within yeiA at 2233.584 kb on - strand, within yeiA at 2233.679 kb on - strand, within yeiA at 2233.690 kb on - strand, within yeiA at 2233.690 kb on - strand, within yeiA at 2233.711 kb on + strand at 2233.721 kb on + strand, within yeiA at 2233.721 kb on + strand, within yeiA at 2233.800 kb on - strand, within yeiA at 2233.904 kb on + strand, within yeiA at 2233.963 kb on + strand, within yeiA at 2234.029 kb on + strand, within yeiA at 2234.029 kb on + strand, within yeiA at 2234.029 kb on + strand, within yeiA at 2234.037 kb on - strand, within yeiA at 2234.078 kb on - strand, within yeiA at 2234.078 kb on - strand, within yeiA at 2234.127 kb on - strand, within yeiA at 2234.145 kb on + strand, within yeiA at 2234.145 kb on + strand, within yeiA at 2234.151 kb on + strand, within yeiA at 2234.151 kb on + strand, within yeiA at 2234.155 kb on - strand, within yeiA at 2234.155 kb on - strand, within yeiA at 2234.156 kb on - strand, within yeiA at 2234.156 kb on - strand, within yeiA at 2234.228 kb on - strand, within yeiA at 2234.235 kb on - strand, within yeiA at 2234.268 kb on + strand, within yeiA at 2234.289 kb on + strand, within yeiA at 2234.289 kb on - strand, within yeiA at 2234.335 kb on + strand, within yeiA at 2234.341 kb on - strand, within yeiA at 2234.356 kb on + strand, within yeiA at 2234.387 kb on + strand, within yeiA at 2234.402 kb on + strand at 2234.461 kb on + strand at 2234.561 kb on - strand at 2234.644 kb on + strand at 2234.789 kb on - strand at 2234.823 kb on + strand at 2234.843 kb on + strand at 2234.859 kb on + strand at 2234.923 kb on + strand, within mglC at 2234.944 kb on + strand, within mglC at 2234.944 kb on + strand, within mglC at 2234.944 kb on + strand, within mglC at 2234.944 kb on + strand, within mglC at 2234.956 kb on - strand, within mglC at 2234.963 kb on - strand, within mglC at 2234.963 kb on - strand, within mglC at 2234.988 kb on - strand, within mglC at 2235.007 kb on + strand, within mglC at 2235.021 kb on - strand, within mglC at 2235.075 kb on + strand, within mglC at 2235.103 kb on - strand, within mglC at 2235.103 kb on - strand, within mglC at 2235.107 kb on + strand, within mglC at 2235.107 kb on + strand, within mglC at 2235.113 kb on - strand, within mglC at 2235.113 kb on - strand, within mglC at 2235.209 kb on + strand, within mglC at 2235.259 kb on + strand, within mglC at 2235.366 kb on + strand, within mglC at 2235.366 kb on + strand, within mglC at 2235.473 kb on + strand, within mglC at 2235.473 kb on + strand, within mglC at 2235.522 kb on + strand, within mglC
Per-strain Table
Position Strand Gene LocusTag Fraction T7_phage 0.0000015625 MOI TC1 remove 2,232,311 + yeiT b2146 0.21 -1.0 2,232,311 + yeiT b2146 0.21 +0.8 2,232,326 + yeiT b2146 0.22 -0.4 2,232,326 + yeiT b2146 0.22 -0.8 2,232,326 + yeiT b2146 0.22 -2.0 2,232,333 - yeiT b2146 0.22 +1.6 2,232,333 - yeiT b2146 0.22 +0.2 2,232,346 + yeiT b2146 0.23 +1.3 2,232,473 + yeiT b2146 0.34 +0.5 2,232,575 + yeiT b2146 0.42 +1.2 2,232,643 + yeiT b2146 0.47 +0.2 2,232,643 + yeiT b2146 0.47 -0.9 2,232,699 - yeiT b2146 0.52 -0.3 2,232,699 - yeiT b2146 0.52 +0.4 2,232,719 + yeiT b2146 0.54 -0.1 2,232,861 - yeiT b2146 0.65 +0.6 2,232,995 - yeiT b2146 0.76 -0.1 2,233,038 + yeiT b2146 0.79 -0.2 2,233,102 + yeiT b2146 0.85 +0.1 2,233,102 + yeiT b2146 0.85 -0.1 2,233,125 - yeiT b2146 0.86 +0.0 2,233,131 + yeiT b2146 0.87 +0.5 2,233,283 - +1.2 2,233,422 - yeiA b2147 0.11 +0.6 2,233,584 - yeiA b2147 0.24 +0.4 2,233,679 - yeiA b2147 0.32 +1.4 2,233,690 - yeiA b2147 0.33 +0.4 2,233,690 - yeiA b2147 0.33 +0.2 2,233,711 + +1.4 2,233,721 + yeiA b2147 0.35 -0.0 2,233,721 + yeiA b2147 0.35 +2.1 2,233,800 - yeiA b2147 0.42 -0.5 2,233,904 + yeiA b2147 0.50 -2.3 2,233,963 + yeiA b2147 0.55 -1.3 2,234,029 + yeiA b2147 0.60 +0.8 2,234,029 + yeiA b2147 0.60 -1.2 2,234,029 + yeiA b2147 0.60 -0.1 2,234,037 - yeiA b2147 0.61 +0.2 2,234,078 - yeiA b2147 0.64 -0.8 2,234,078 - yeiA b2147 0.64 +0.6 2,234,127 - yeiA b2147 0.68 +0.3 2,234,145 + yeiA b2147 0.69 -0.3 2,234,145 + yeiA b2147 0.69 +1.5 2,234,151 + yeiA b2147 0.70 +0.9 2,234,151 + yeiA b2147 0.70 +0.5 2,234,155 - yeiA b2147 0.70 +2.0 2,234,155 - yeiA b2147 0.70 -0.2 2,234,156 - yeiA b2147 0.70 +1.7 2,234,156 - yeiA b2147 0.70 +0.1 2,234,228 - yeiA b2147 0.76 +0.7 2,234,235 - yeiA b2147 0.77 -0.3 2,234,268 + yeiA b2147 0.79 +1.0 2,234,289 + yeiA b2147 0.81 +0.5 2,234,289 - yeiA b2147 0.81 -0.2 2,234,335 + yeiA b2147 0.85 +0.1 2,234,341 - yeiA b2147 0.85 +0.8 2,234,356 + yeiA b2147 0.86 -0.5 2,234,387 + yeiA b2147 0.89 +0.4 2,234,402 + -1.3 2,234,461 + -0.0 2,234,561 - +2.0 2,234,644 + +0.7 2,234,789 - +0.1 2,234,823 + -0.9 2,234,843 + +1.3 2,234,859 + +0.4 2,234,923 + mglC b2148 0.16 -1.3 2,234,944 + mglC b2148 0.18 -2.6 2,234,944 + mglC b2148 0.18 +0.7 2,234,944 + mglC b2148 0.18 -0.7 2,234,944 + mglC b2148 0.18 -1.2 2,234,956 - mglC b2148 0.19 +0.2 2,234,963 - mglC b2148 0.20 +0.5 2,234,963 - mglC b2148 0.20 -0.7 2,234,988 - mglC b2148 0.22 -0.4 2,235,007 + mglC b2148 0.24 -0.0 2,235,021 - mglC b2148 0.25 -0.2 2,235,075 + mglC b2148 0.31 -0.6 2,235,103 - mglC b2148 0.33 +0.5 2,235,103 - mglC b2148 0.33 +0.9 2,235,107 + mglC b2148 0.34 -0.1 2,235,107 + mglC b2148 0.34 -0.1 2,235,113 - mglC b2148 0.34 -0.1 2,235,113 - mglC b2148 0.34 +0.3 2,235,209 + mglC b2148 0.44 -0.0 2,235,259 + mglC b2148 0.49 -0.4 2,235,366 + mglC b2148 0.59 -0.8 2,235,366 + mglC b2148 0.59 +0.1 2,235,473 + mglC b2148 0.70 -0.4 2,235,473 + mglC b2148 0.70 +0.5 2,235,522 + mglC b2148 0.75 -0.2
Or see this region's nucleotide sequence