Experiment: T7_phage 0.0000015625 MOI TC1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b2060 and wzb are separated by 2 nucleotides wzb and wza are separated by 5 nucleotides
b2060: b2060 - orf, hypothetical protein (VIMSS), at 2,131,514 to 2,133,676
b2060
b2061: wzb - protein-tyrosine phosphatase (NCBI), at 2,133,679 to 2,134,122
wzb
b2062: wza - lipoprotein required for capsular polysaccharide translocation through the outer membrane (NCBI), at 2,134,128 to 2,135,267
wza
Position (kb)
2133
2134
2135 Strain fitness (log2 ratio)
-2
-1
0
1 at 2132.698 kb on + strand, within b2060 at 2132.698 kb on + strand, within b2060 at 2132.842 kb on - strand, within b2060 at 2132.973 kb on + strand, within b2060 at 2132.981 kb on - strand, within b2060 at 2133.037 kb on - strand, within b2060 at 2133.348 kb on - strand, within b2060 at 2133.494 kb on - strand at 2133.538 kb on - strand at 2133.685 kb on - strand at 2134.043 kb on + strand, within wzb at 2134.142 kb on - strand at 2134.142 kb on - strand at 2134.157 kb on - strand at 2134.208 kb on - strand at 2134.244 kb on - strand, within wza at 2134.244 kb on - strand, within wza at 2134.329 kb on + strand, within wza at 2134.385 kb on + strand, within wza at 2134.409 kb on + strand, within wza at 2134.417 kb on - strand, within wza at 2134.417 kb on - strand, within wza at 2134.427 kb on - strand, within wza at 2134.427 kb on - strand, within wza at 2134.545 kb on + strand, within wza at 2134.545 kb on + strand, within wza at 2134.545 kb on + strand, within wza at 2134.599 kb on + strand, within wza at 2134.604 kb on + strand, within wza at 2134.744 kb on + strand, within wza at 2134.801 kb on - strand, within wza at 2134.801 kb on - strand, within wza at 2134.961 kb on + strand, within wza at 2134.991 kb on - strand, within wza at 2134.993 kb on - strand, within wza at 2134.993 kb on - strand, within wza at 2135.044 kb on + strand, within wza at 2135.052 kb on - strand, within wza at 2135.052 kb on - strand, within wza at 2135.055 kb on - strand, within wza at 2135.055 kb on - strand, within wza at 2135.058 kb on + strand, within wza at 2135.072 kb on - strand, within wza at 2135.075 kb on + strand, within wza at 2135.082 kb on - strand, within wza at 2135.082 kb on - strand, within wza at 2135.093 kb on + strand, within wza at 2135.106 kb on + strand, within wza at 2135.114 kb on - strand, within wza at 2135.116 kb on - strand, within wza
Per-strain Table
Position Strand Gene LocusTag Fraction T7_phage 0.0000015625 MOI TC1 remove 2,132,698 + b2060 b2060 0.55 -0.3 2,132,698 + b2060 b2060 0.55 +0.4 2,132,842 - b2060 b2060 0.61 +0.8 2,132,973 + b2060 b2060 0.67 -0.3 2,132,981 - b2060 b2060 0.68 -0.9 2,133,037 - b2060 b2060 0.70 +0.1 2,133,348 - b2060 b2060 0.85 +0.5 2,133,494 - -0.3 2,133,538 - -1.6 2,133,685 - +0.9 2,134,043 + wzb b2061 0.82 +0.5 2,134,142 - +0.0 2,134,142 - -0.6 2,134,157 - +0.1 2,134,208 - -0.5 2,134,244 - wza b2062 0.10 -1.2 2,134,244 - wza b2062 0.10 -0.5 2,134,329 + wza b2062 0.18 +0.1 2,134,385 + wza b2062 0.23 -0.1 2,134,409 + wza b2062 0.25 -0.1 2,134,417 - wza b2062 0.25 -0.0 2,134,417 - wza b2062 0.25 -0.3 2,134,427 - wza b2062 0.26 -0.2 2,134,427 - wza b2062 0.26 -0.4 2,134,545 + wza b2062 0.37 +0.8 2,134,545 + wza b2062 0.37 -0.2 2,134,545 + wza b2062 0.37 -0.4 2,134,599 + wza b2062 0.41 -2.4 2,134,604 + wza b2062 0.42 +0.3 2,134,744 + wza b2062 0.54 +0.1 2,134,801 - wza b2062 0.59 -0.5 2,134,801 - wza b2062 0.59 -0.6 2,134,961 + wza b2062 0.73 +1.0 2,134,991 - wza b2062 0.76 -0.2 2,134,993 - wza b2062 0.76 +0.7 2,134,993 - wza b2062 0.76 +0.8 2,135,044 + wza b2062 0.80 -1.9 2,135,052 - wza b2062 0.81 +0.5 2,135,052 - wza b2062 0.81 +0.3 2,135,055 - wza b2062 0.81 -0.1 2,135,055 - wza b2062 0.81 -0.1 2,135,058 + wza b2062 0.82 +0.2 2,135,072 - wza b2062 0.83 +0.2 2,135,075 + wza b2062 0.83 -0.3 2,135,082 - wza b2062 0.84 -0.9 2,135,082 - wza b2062 0.84 -0.1 2,135,093 + wza b2062 0.85 -0.2 2,135,106 + wza b2062 0.86 +0.5 2,135,114 - wza b2062 0.86 -0.6 2,135,116 - wza b2062 0.87 +0.0
Or see this region's nucleotide sequence