Experiment: T7_phage 0.0000015625 MOI TC1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tehA and tehB overlap by 4 nucleotides tehB and ydcL are separated by 301 nucleotides ydcL and insP are separated by 92 nucleotides insP and insQ are separated by 67 nucleotides
b1429: tehA - potassium-tellurite ethidium and proflavin transporter (NCBI), at 1,498,597 to 1,499,589
tehA
b1430: tehB - predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI), at 1,499,586 to 1,500,179
tehB
b1431: ydcL - predicted lipoprotein (NCBI), at 1,500,481 to 1,501,149
ydcL
b4578: insP - no description, at 1,501,242 to 1,501,673
insP
b1432: insQ - IS609 transposase B (RefSeq), at 1,501,741 to 1,502,889
insQ
Position (kb)
1500
1501
1502 Strain fitness (log2 ratio)
-1
0
1
2 at 1499.640 kb on + strand at 1499.650 kb on - strand, within tehB at 1499.699 kb on - strand, within tehB at 1499.709 kb on - strand, within tehB at 1499.726 kb on + strand, within tehB at 1499.741 kb on - strand, within tehB at 1499.831 kb on - strand, within tehB at 1499.859 kb on - strand, within tehB at 1499.991 kb on + strand, within tehB at 1499.991 kb on + strand, within tehB at 1500.069 kb on + strand, within tehB at 1500.069 kb on + strand, within tehB at 1500.113 kb on - strand, within tehB at 1500.128 kb on + strand at 1500.128 kb on + strand at 1500.191 kb on - strand at 1500.191 kb on - strand at 1500.496 kb on - strand at 1500.496 kb on - strand at 1500.540 kb on - strand at 1500.542 kb on - strand at 1500.685 kb on + strand, within ydcL at 1500.726 kb on + strand, within ydcL at 1500.762 kb on + strand, within ydcL at 1500.946 kb on + strand, within ydcL at 1501.107 kb on + strand at 1501.107 kb on + strand at 1501.126 kb on - strand at 1501.226 kb on - strand at 1501.226 kb on - strand at 1501.257 kb on + strand at 1501.305 kb on - strand, within insP at 1501.305 kb on - strand, within insP at 1501.361 kb on - strand, within insP at 1501.430 kb on - strand, within insP at 1501.472 kb on - strand, within insP at 1501.681 kb on + strand at 1501.681 kb on + strand at 1501.929 kb on + strand, within insQ
Per-strain Table
Position Strand Gene LocusTag Fraction T7_phage 0.0000015625 MOI TC1 remove 1,499,640 + -0.8 1,499,650 - tehB b1430 0.11 -0.6 1,499,699 - tehB b1430 0.19 +1.0 1,499,709 - tehB b1430 0.21 -0.2 1,499,726 + tehB b1430 0.24 +0.4 1,499,741 - tehB b1430 0.26 -1.3 1,499,831 - tehB b1430 0.41 -0.4 1,499,859 - tehB b1430 0.46 +0.1 1,499,991 + tehB b1430 0.68 +0.4 1,499,991 + tehB b1430 0.68 -0.3 1,500,069 + tehB b1430 0.81 +0.1 1,500,069 + tehB b1430 0.81 +0.3 1,500,113 - tehB b1430 0.89 +2.3 1,500,128 + +0.3 1,500,128 + -0.8 1,500,191 - +1.7 1,500,191 - +0.3 1,500,496 - -0.3 1,500,496 - +0.4 1,500,540 - +0.1 1,500,542 - +0.5 1,500,685 + ydcL b1431 0.30 +0.1 1,500,726 + ydcL b1431 0.37 +0.9 1,500,762 + ydcL b1431 0.42 +0.2 1,500,946 + ydcL b1431 0.70 +0.1 1,501,107 + -1.1 1,501,107 + -0.9 1,501,126 - -0.5 1,501,226 - +0.0 1,501,226 - +0.4 1,501,257 + +0.0 1,501,305 - insP b4578 0.15 +0.7 1,501,305 - insP b4578 0.15 -0.5 1,501,361 - insP b4578 0.28 +0.9 1,501,430 - insP b4578 0.44 -0.7 1,501,472 - insP b4578 0.53 +0.7 1,501,681 + +0.0 1,501,681 + +0.8 1,501,929 + insQ b1432 0.16 -0.1
Or see this region's nucleotide sequence