Strain Fitness in Escherichia coli BW25113 around b0787

Experiment: N4_phage 0.0009375 MOI TC2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybhL and ybhM are separated by 204 nucleotidesybhM and ybhN are separated by 35 nucleotidesybhN and ybhO overlap by 1 nucleotides b0786: ybhL - predicted inner membrane protein (NCBI), at 819,107 to 819,811 ybhL b0787: ybhM - conserved inner membrane protein (NCBI), at 820,016 to 820,729 ybhM b0788: ybhN - conserved inner membrane protein (NCBI), at 820,765 to 821,721 ybhN b0789: ybhO - cardiolipin synthase 2 (NCBI), at 821,721 to 822,962 ybhO Position (kb) 820 821Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 819.022 kb on + strandat 819.025 kb on - strandat 819.154 kb on + strandat 819.210 kb on + strand, within ybhLat 819.259 kb on + strand, within ybhLat 819.314 kb on + strand, within ybhLat 819.314 kb on + strand, within ybhLat 819.354 kb on + strand, within ybhLat 819.408 kb on + strand, within ybhLat 819.490 kb on + strand, within ybhLat 819.490 kb on + strand, within ybhLat 819.493 kb on + strand, within ybhLat 819.500 kb on + strand, within ybhLat 819.500 kb on + strand, within ybhLat 819.553 kb on - strand, within ybhLat 819.568 kb on - strand, within ybhLat 819.568 kb on - strand, within ybhLat 819.599 kb on + strand, within ybhLat 819.606 kb on + strand, within ybhLat 819.612 kb on - strand, within ybhLat 819.614 kb on + strand, within ybhLat 819.614 kb on + strand, within ybhLat 819.614 kb on + strand, within ybhLat 819.616 kb on + strand, within ybhLat 819.617 kb on + strand, within ybhLat 819.625 kb on - strand, within ybhLat 819.647 kb on - strand, within ybhLat 819.657 kb on + strand, within ybhLat 819.691 kb on + strand, within ybhLat 819.691 kb on + strand, within ybhLat 819.691 kb on + strand, within ybhLat 819.762 kb on + strandat 819.770 kb on - strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.825 kb on + strandat 819.830 kb on + strandat 819.830 kb on + strandat 819.833 kb on - strandat 819.833 kb on - strandat 819.887 kb on + strandat 819.888 kb on + strandat 819.888 kb on + strandat 819.961 kb on + strandat 820.088 kb on - strand, within ybhMat 820.106 kb on - strand, within ybhMat 820.115 kb on + strand, within ybhMat 820.134 kb on - strand, within ybhMat 820.134 kb on - strand, within ybhMat 820.134 kb on - strand, within ybhMat 820.322 kb on + strand, within ybhMat 820.322 kb on + strand, within ybhMat 820.332 kb on + strand, within ybhMat 820.350 kb on - strand, within ybhMat 820.445 kb on - strand, within ybhMat 820.448 kb on - strand, within ybhMat 820.452 kb on + strand, within ybhMat 820.454 kb on - strand, within ybhMat 820.454 kb on - strand, within ybhMat 820.454 kb on - strand, within ybhMat 820.485 kb on - strand, within ybhMat 820.528 kb on - strand, within ybhMat 820.528 kb on - strand, within ybhMat 820.536 kb on - strand, within ybhMat 820.573 kb on + strand, within ybhMat 820.581 kb on - strand, within ybhMat 820.589 kb on + strand, within ybhMat 820.590 kb on - strand, within ybhMat 820.597 kb on + strand, within ybhMat 820.598 kb on - strand, within ybhMat 820.599 kb on + strand, within ybhMat 820.599 kb on + strand, within ybhMat 820.605 kb on - strand, within ybhMat 820.605 kb on - strand, within ybhMat 820.605 kb on - strand, within ybhMat 820.608 kb on - strand, within ybhMat 820.613 kb on - strand, within ybhMat 820.613 kb on - strand, within ybhMat 820.620 kb on + strand, within ybhMat 820.620 kb on + strand, within ybhMat 820.628 kb on - strand, within ybhMat 820.638 kb on - strand, within ybhMat 820.663 kb on + strandat 820.663 kb on + strandat 820.685 kb on + strandat 820.686 kb on + strandat 820.686 kb on + strandat 820.693 kb on - strandat 820.693 kb on - strandat 820.694 kb on - strandat 820.694 kb on - strandat 820.699 kb on - strandat 820.702 kb on - strandat 820.715 kb on - strandat 820.826 kb on - strandat 820.826 kb on - strandat 820.826 kb on - strandat 820.926 kb on - strand, within ybhNat 821.003 kb on + strand, within ybhNat 821.004 kb on - strand, within ybhNat 821.158 kb on - strand, within ybhNat 821.314 kb on - strand, within ybhNat 821.329 kb on + strand, within ybhNat 821.333 kb on - strand, within ybhNat 821.435 kb on - strand, within ybhNat 821.615 kb on - strand, within ybhNat 821.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4_phage 0.0009375 MOI TC2
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819,022 + +1.0
819,025 - +1.2
819,154 + -0.5
819,210 + ybhL b0786 0.15 -0.8
819,259 + ybhL b0786 0.22 +0.8
819,314 + ybhL b0786 0.29 +1.1
819,314 + ybhL b0786 0.29 -0.0
819,354 + ybhL b0786 0.35 +1.9
819,408 + ybhL b0786 0.43 -0.5
819,490 + ybhL b0786 0.54 -0.3
819,490 + ybhL b0786 0.54 +0.6
819,493 + ybhL b0786 0.55 +0.5
819,500 + ybhL b0786 0.56 +0.6
819,500 + ybhL b0786 0.56 +0.1
819,553 - ybhL b0786 0.63 +0.7
819,568 - ybhL b0786 0.65 +1.6
819,568 - ybhL b0786 0.65 +0.3
819,599 + ybhL b0786 0.70 +0.0
819,606 + ybhL b0786 0.71 -2.3
819,612 - ybhL b0786 0.72 +0.8
819,614 + ybhL b0786 0.72 -0.7
819,614 + ybhL b0786 0.72 -0.7
819,614 + ybhL b0786 0.72 -1.1
819,616 + ybhL b0786 0.72 +0.0
819,617 + ybhL b0786 0.72 +0.3
819,625 - ybhL b0786 0.73 +0.5
819,647 - ybhL b0786 0.77 -0.8
819,657 + ybhL b0786 0.78 +0.2
819,691 + ybhL b0786 0.83 +0.1
819,691 + ybhL b0786 0.83 -0.5
819,691 + ybhL b0786 0.83 +0.2
819,762 + -1.5
819,770 - +1.5
819,825 + -0.4
819,825 + +0.7
819,825 + -0.8
819,825 + +0.1
819,825 + +0.1
819,825 + -0.0
819,830 + +0.3
819,830 + -0.3
819,833 - +3.1
819,833 - +2.5
819,887 + -0.8
819,888 + -0.1
819,888 + +1.5
819,961 + +1.8
820,088 - ybhM b0787 0.10 +2.5
820,106 - ybhM b0787 0.13 +2.5
820,115 + ybhM b0787 0.14 +2.5
820,134 - ybhM b0787 0.17 +2.5
820,134 - ybhM b0787 0.17 +1.5
820,134 - ybhM b0787 0.17 +1.5
820,322 + ybhM b0787 0.43 +2.5
820,322 + ybhM b0787 0.43 +1.5
820,332 + ybhM b0787 0.44 +2.5
820,350 - ybhM b0787 0.47 +2.5
820,445 - ybhM b0787 0.60 +1.2
820,448 - ybhM b0787 0.61 -0.8
820,452 + ybhM b0787 0.61 +2.5
820,454 - ybhM b0787 0.61 -1.0
820,454 - ybhM b0787 0.61 +0.9
820,454 - ybhM b0787 0.61 +2.8
820,485 - ybhM b0787 0.66 +0.5
820,528 - ybhM b0787 0.72 +2.2
820,528 - ybhM b0787 0.72 +2.5
820,536 - ybhM b0787 0.73 -0.2
820,573 + ybhM b0787 0.78 +2.5
820,581 - ybhM b0787 0.79 +1.3
820,589 + ybhM b0787 0.80 +2.5
820,590 - ybhM b0787 0.80 +4.3
820,597 + ybhM b0787 0.81 +2.5
820,598 - ybhM b0787 0.82 +1.6
820,599 + ybhM b0787 0.82 +2.5
820,599 + ybhM b0787 0.82 +0.5
820,605 - ybhM b0787 0.82 +0.2
820,605 - ybhM b0787 0.82 -1.9
820,605 - ybhM b0787 0.82 -0.5
820,608 - ybhM b0787 0.83 -0.3
820,613 - ybhM b0787 0.84 -1.2
820,613 - ybhM b0787 0.84 -0.0
820,620 + ybhM b0787 0.85 +3.9
820,620 + ybhM b0787 0.85 +0.5
820,628 - ybhM b0787 0.86 +1.5
820,638 - ybhM b0787 0.87 +2.5
820,663 + +1.5
820,663 + +2.5
820,685 + -1.9
820,686 + +0.3
820,686 + +2.5
820,693 - +2.7
820,693 - -1.4
820,694 - +2.5
820,694 - +0.9
820,699 - -0.1
820,702 - -0.3
820,715 - -0.1
820,826 - +1.4
820,826 - -0.8
820,826 - -0.8
820,926 - ybhN b0788 0.17 -2.0
821,003 + ybhN b0788 0.25 +0.7
821,004 - ybhN b0788 0.25 -0.1
821,158 - ybhN b0788 0.41 +0.5
821,314 - ybhN b0788 0.57 +0.0
821,329 + ybhN b0788 0.59 -0.6
821,333 - ybhN b0788 0.59 -0.8
821,435 - ybhN b0788 0.70 +0.6
821,615 - ybhN b0788 0.89 -0.4
821,666 - +0.8

Or see this region's nucleotide sequence