Experiment: ferulate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5174 and PP_5175 overlap by 4 nucleotides PP_5175 and PP_5176 are separated by 267 nucleotides PP_5176 and PP_5177 are separated by 106 nucleotides
PP_5174: PP_5174 - Efflux membrane fusion protein, RND family, at 5,900,884 to 5,901,951
_5174
PP_5175: PP_5175 - HlyD family secretion protein, at 5,901,948 to 5,903,036
_5175
PP_5176: PP_5176 - conserved protein of unknown function, at 5,903,304 to 5,903,744
_5176
PP_5177: PP_5177 - spermidine/putrescine ABC transporter - permease subunit, at 5,903,851 to 5,904,744
_5177
Position (kb) 5901
5902
5903
5904 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5901.048 kb on + strand, within PP_5174 at 5901.216 kb on + strand, within PP_5174 at 5901.217 kb on - strand, within PP_5174 at 5901.429 kb on + strand, within PP_5174 at 5901.464 kb on + strand at 5901.465 kb on - strand, within PP_5174 at 5901.572 kb on - strand, within PP_5174 at 5901.584 kb on + strand, within PP_5174 at 5901.584 kb on + strand, within PP_5174 at 5901.584 kb on + strand, within PP_5174 at 5901.584 kb on + strand, within PP_5174 at 5901.585 kb on - strand, within PP_5174 at 5901.585 kb on - strand, within PP_5174 at 5901.898 kb on - strand at 5901.951 kb on + strand at 5901.952 kb on - strand at 5901.952 kb on - strand at 5901.952 kb on - strand at 5901.952 kb on - strand at 5901.952 kb on - strand at 5901.987 kb on + strand at 5901.988 kb on - strand at 5901.988 kb on - strand at 5902.029 kb on + strand at 5902.030 kb on - strand at 5902.266 kb on + strand, within PP_5175 at 5902.278 kb on + strand, within PP_5175 at 5902.320 kb on + strand, within PP_5175 at 5902.320 kb on + strand, within PP_5175 at 5902.368 kb on + strand, within PP_5175 at 5902.408 kb on + strand, within PP_5175 at 5902.408 kb on + strand, within PP_5175 at 5902.409 kb on - strand, within PP_5175 at 5902.540 kb on + strand, within PP_5175 at 5902.630 kb on + strand, within PP_5175 at 5902.630 kb on + strand, within PP_5175 at 5902.630 kb on + strand, within PP_5175 at 5902.631 kb on - strand, within PP_5175 at 5902.631 kb on - strand, within PP_5175 at 5902.631 kb on - strand, within PP_5175 at 5902.722 kb on + strand, within PP_5175 at 5902.722 kb on + strand, within PP_5175 at 5902.924 kb on - strand, within PP_5175 at 5902.973 kb on + strand at 5902.973 kb on + strand at 5902.974 kb on - strand at 5902.990 kb on + strand at 5902.990 kb on + strand at 5902.990 kb on + strand at 5902.991 kb on - strand at 5902.991 kb on - strand at 5902.991 kb on - strand at 5902.991 kb on - strand at 5902.991 kb on - strand at 5902.991 kb on - strand at 5903.087 kb on + strand at 5903.088 kb on - strand at 5903.088 kb on - strand at 5903.088 kb on - strand at 5903.103 kb on - strand at 5903.193 kb on + strand at 5903.193 kb on + strand at 5903.193 kb on + strand at 5903.194 kb on - strand at 5903.194 kb on - strand at 5903.194 kb on - strand at 5903.194 kb on - strand at 5903.194 kb on - strand at 5903.194 kb on - strand at 5903.199 kb on + strand at 5903.200 kb on - strand at 5903.252 kb on - strand at 5903.350 kb on + strand, within PP_5176 at 5903.474 kb on - strand, within PP_5176 at 5903.656 kb on + strand, within PP_5176 at 5903.657 kb on - strand, within PP_5176 at 5903.705 kb on + strand at 5903.705 kb on + strand at 5903.706 kb on - strand at 5903.706 kb on - strand at 5903.976 kb on - strand, within PP_5177
Per-strain Table
Position Strand Gene LocusTag Fraction ferulate (C); with MOPS remove 5,901,048 + PP_5174 0.15 +1.0 5,901,216 + PP_5174 0.31 +0.5 5,901,217 - PP_5174 0.31 +2.1 5,901,429 + PP_5174 0.51 +2.7 5,901,464 + +0.3 5,901,465 - PP_5174 0.54 -0.8 5,901,572 - PP_5174 0.64 +0.8 5,901,584 + PP_5174 0.66 +1.9 5,901,584 + PP_5174 0.66 +1.3 5,901,584 + PP_5174 0.66 -0.2 5,901,584 + PP_5174 0.66 +0.3 5,901,585 - PP_5174 0.66 +0.4 5,901,585 - PP_5174 0.66 +2.0 5,901,898 - +1.2 5,901,951 + +1.5 5,901,952 - +1.0 5,901,952 - -0.4 5,901,952 - -1.3 5,901,952 - +0.2 5,901,952 - -1.4 5,901,987 + +0.1 5,901,988 - -0.7 5,901,988 - -2.8 5,902,029 + -2.0 5,902,030 - +1.3 5,902,266 + PP_5175 0.29 +0.6 5,902,278 + PP_5175 0.30 +0.5 5,902,320 + PP_5175 0.34 -2.0 5,902,320 + PP_5175 0.34 -3.1 5,902,368 + PP_5175 0.39 +3.0 5,902,408 + PP_5175 0.42 +1.9 5,902,408 + PP_5175 0.42 +2.0 5,902,409 - PP_5175 0.42 -2.7 5,902,540 + PP_5175 0.54 -1.6 5,902,630 + PP_5175 0.63 -1.0 5,902,630 + PP_5175 0.63 +2.8 5,902,630 + PP_5175 0.63 -3.1 5,902,631 - PP_5175 0.63 -0.2 5,902,631 - PP_5175 0.63 +0.7 5,902,631 - PP_5175 0.63 -2.1 5,902,722 + PP_5175 0.71 +1.4 5,902,722 + PP_5175 0.71 +2.5 5,902,924 - PP_5175 0.90 +0.2 5,902,973 + +3.3 5,902,973 + -2.9 5,902,974 - +0.9 5,902,990 + +0.2 5,902,990 + -0.0 5,902,990 + +0.4 5,902,991 - +0.4 5,902,991 - -1.2 5,902,991 - +0.6 5,902,991 - -0.1 5,902,991 - -1.6 5,902,991 - +1.8 5,903,087 + -1.1 5,903,088 - +1.4 5,903,088 - -4.0 5,903,088 - -2.8 5,903,103 - -2.9 5,903,193 + +0.8 5,903,193 + -2.4 5,903,193 + -1.8 5,903,194 - -2.8 5,903,194 - +0.4 5,903,194 - -1.5 5,903,194 - +2.9 5,903,194 - -2.2 5,903,194 - -2.6 5,903,199 + +2.4 5,903,200 - +1.9 5,903,252 - -0.0 5,903,350 + PP_5176 0.10 +1.5 5,903,474 - PP_5176 0.39 +1.2 5,903,656 + PP_5176 0.80 -3.3 5,903,657 - PP_5176 0.80 -1.7 5,903,705 + +0.5 5,903,705 + +1.0 5,903,706 - -2.9 5,903,706 - -0.4 5,903,976 - PP_5177 0.14 -2.5
Or see this region's nucleotide sequence