Strain Fitness in Pseudomonas putida KT2440 around PP_4514

Experiment: ferulate (C); with MOPS

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4512 and PP_4513 are separated by 0 nucleotidesPP_4513 and PP_4514 are separated by 67 nucleotidesPP_4514 and PP_4515 are separated by 32 nucleotidesPP_4515 and PP_4516 are separated by 151 nucleotides PP_4512: PP_4512 - putative permease of the drug/metabolite transporter (DMT) superfamily, at 5,125,208 to 5,126,098 _4512 PP_4513: PP_4513 - conserved protein of unknown function, at 5,126,099 to 5,126,380 _4513 PP_4514: PP_4514 - putative esterase of the alpha-beta hydrolase superfamily, at 5,126,448 to 5,128,634 _4514 PP_4515: PP_4515 - Transcriptional regulator, MarR family, at 5,128,667 to 5,129,104 _4515 PP_4516: PP_4516 - ATP-dependent DNA 3, at 5,129,256 to 5,131,403 _4516 Position (kb) 5126 5127 5128 5129Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5125.483 kb on - strand, within PP_4512at 5125.483 kb on - strand, within PP_4512at 5125.558 kb on + strand, within PP_4512at 5125.608 kb on + strand, within PP_4512at 5125.609 kb on - strand, within PP_4512at 5125.738 kb on - strand, within PP_4512at 5125.946 kb on + strand, within PP_4512at 5125.947 kb on - strand, within PP_4512at 5125.951 kb on + strand, within PP_4512at 5125.952 kb on - strand, within PP_4512at 5126.162 kb on + strand, within PP_4513at 5126.163 kb on - strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.346 kb on + strand, within PP_4513at 5126.347 kb on - strand, within PP_4513at 5126.347 kb on - strand, within PP_4513at 5126.347 kb on - strand, within PP_4513at 5126.398 kb on + strandat 5126.399 kb on - strandat 5126.410 kb on + strandat 5126.410 kb on + strandat 5126.411 kb on - strandat 5126.411 kb on - strandat 5126.411 kb on - strandat 5126.412 kb on + strandat 5126.412 kb on + strandat 5126.412 kb on + strandat 5126.413 kb on - strandat 5126.413 kb on - strandat 5126.413 kb on - strandat 5126.413 kb on - strandat 5126.415 kb on + strandat 5126.415 kb on + strandat 5126.426 kb on - strandat 5126.426 kb on - strandat 5126.484 kb on - strandat 5126.579 kb on - strandat 5126.658 kb on + strandat 5126.658 kb on + strandat 5126.659 kb on - strandat 5126.670 kb on + strand, within PP_4514at 5126.671 kb on - strand, within PP_4514at 5126.671 kb on - strand, within PP_4514at 5127.005 kb on - strand, within PP_4514at 5127.005 kb on - strand, within PP_4514at 5127.178 kb on + strand, within PP_4514at 5127.178 kb on + strand, within PP_4514at 5127.178 kb on + strand, within PP_4514at 5127.178 kb on + strand, within PP_4514at 5127.178 kb on + strand, within PP_4514at 5127.179 kb on - strand, within PP_4514at 5127.179 kb on - strand, within PP_4514at 5127.448 kb on + strand, within PP_4514at 5127.452 kb on + strand, within PP_4514at 5127.507 kb on + strand, within PP_4514at 5127.508 kb on - strand, within PP_4514at 5127.508 kb on - strand, within PP_4514at 5127.508 kb on - strand, within PP_4514at 5127.508 kb on - strand, within PP_4514at 5127.508 kb on - strand, within PP_4514at 5127.509 kb on + strand, within PP_4514at 5127.510 kb on - strand, within PP_4514at 5127.566 kb on + strand, within PP_4514at 5127.566 kb on + strand, within PP_4514at 5127.574 kb on - strand, within PP_4514at 5127.574 kb on - strand, within PP_4514at 5127.585 kb on + strand, within PP_4514at 5127.586 kb on - strand, within PP_4514at 5127.603 kb on + strand, within PP_4514at 5127.603 kb on + strand, within PP_4514at 5127.603 kb on + strand, within PP_4514at 5127.675 kb on + strand, within PP_4514at 5127.676 kb on - strand, within PP_4514at 5127.819 kb on + strand, within PP_4514at 5127.831 kb on + strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.832 kb on - strand, within PP_4514at 5127.859 kb on - strand, within PP_4514at 5127.873 kb on + strand, within PP_4514at 5127.949 kb on - strand, within PP_4514at 5127.967 kb on + strand, within PP_4514at 5127.968 kb on - strand, within PP_4514at 5128.099 kb on - strand, within PP_4514at 5128.125 kb on + strand, within PP_4514at 5128.125 kb on + strand, within PP_4514at 5128.125 kb on + strand, within PP_4514at 5128.126 kb on - strand, within PP_4514at 5128.126 kb on - strand, within PP_4514at 5128.171 kb on - strand, within PP_4514at 5128.272 kb on + strand, within PP_4514at 5128.273 kb on - strand, within PP_4514at 5128.398 kb on + strand, within PP_4514at 5128.398 kb on + strand, within PP_4514at 5128.398 kb on + strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.399 kb on - strand, within PP_4514at 5128.425 kb on + strandat 5128.425 kb on + strandat 5128.425 kb on + strandat 5128.449 kb on + strandat 5128.450 kb on - strandat 5128.512 kb on + strandat 5128.512 kb on + strandat 5128.513 kb on - strandat 5128.556 kb on - strandat 5128.556 kb on - strandat 5128.575 kb on + strandat 5128.608 kb on + strandat 5128.711 kb on + strand, within PP_4515at 5128.712 kb on - strand, within PP_4515at 5128.754 kb on + strand, within PP_4515at 5128.754 kb on + strand, within PP_4515at 5128.817 kb on + strand, within PP_4515at 5128.817 kb on + strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.818 kb on - strand, within PP_4515at 5128.922 kb on + strand, within PP_4515at 5128.922 kb on + strand, within PP_4515at 5128.922 kb on + strand, within PP_4515at 5128.923 kb on - strand, within PP_4515at 5128.923 kb on - strand, within PP_4515at 5128.923 kb on - strand, within PP_4515at 5129.104 kb on + strandat 5129.104 kb on + strandat 5129.121 kb on + strandat 5129.121 kb on + strandat 5129.121 kb on + strandat 5129.127 kb on + strandat 5129.127 kb on + strandat 5129.128 kb on - strandat 5129.131 kb on + strandat 5129.135 kb on - strandat 5129.158 kb on + strandat 5129.193 kb on + strandat 5129.296 kb on + strandat 5129.296 kb on + strandat 5129.297 kb on - strandat 5129.297 kb on - strandat 5129.297 kb on - strandat 5129.301 kb on + strandat 5129.301 kb on + strandat 5129.301 kb on + strandat 5129.301 kb on + strandat 5129.302 kb on - strandat 5129.302 kb on - strandat 5129.471 kb on + strand, within PP_4516at 5129.472 kb on - strand, within PP_4516at 5129.472 kb on - strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.473 kb on + strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.474 kb on - strand, within PP_4516at 5129.632 kb on + strand, within PP_4516

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ferulate (C); with MOPS
remove
5,125,483 - PP_4512 0.31 +1.0
5,125,483 - PP_4512 0.31 +0.9
5,125,558 + PP_4512 0.39 -1.0
5,125,608 + PP_4512 0.45 +1.7
5,125,609 - PP_4512 0.45 +0.4
5,125,738 - PP_4512 0.59 -0.0
5,125,946 + PP_4512 0.83 +1.0
5,125,947 - PP_4512 0.83 +0.6
5,125,951 + PP_4512 0.83 +0.5
5,125,952 - PP_4512 0.84 +0.5
5,126,162 + PP_4513 0.22 +1.2
5,126,163 - PP_4513 0.23 -3.2
5,126,346 + PP_4513 0.88 +1.9
5,126,346 + PP_4513 0.88 +0.2
5,126,346 + PP_4513 0.88 +0.4
5,126,346 + PP_4513 0.88 -1.0
5,126,346 + PP_4513 0.88 +0.7
5,126,346 + PP_4513 0.88 +1.2
5,126,347 - PP_4513 0.88 -0.6
5,126,347 - PP_4513 0.88 +1.1
5,126,347 - PP_4513 0.88 -1.0
5,126,398 + +0.7
5,126,399 - -1.2
5,126,410 + +2.0
5,126,410 + +1.2
5,126,411 - +2.5
5,126,411 - -0.3
5,126,411 - -2.2
5,126,412 + +1.1
5,126,412 + +0.9
5,126,412 + +3.1
5,126,413 - +0.5
5,126,413 - -2.8
5,126,413 - +2.8
5,126,413 - -0.2
5,126,415 + -2.0
5,126,415 + -3.1
5,126,426 - -2.9
5,126,426 - -2.3
5,126,484 - -2.1
5,126,579 - -4.1
5,126,658 + -3.9
5,126,658 + -1.4
5,126,659 - +1.7
5,126,670 + PP_4514 0.10 -2.8
5,126,671 - PP_4514 0.10 -0.9
5,126,671 - PP_4514 0.10 -2.0
5,127,005 - PP_4514 0.25 -2.0
5,127,005 - PP_4514 0.25 -3.3
5,127,178 + PP_4514 0.33 -1.0
5,127,178 + PP_4514 0.33 -1.9
5,127,178 + PP_4514 0.33 -2.9
5,127,178 + PP_4514 0.33 -0.8
5,127,178 + PP_4514 0.33 -0.4
5,127,179 - PP_4514 0.33 +1.1
5,127,179 - PP_4514 0.33 -3.1
5,127,448 + PP_4514 0.46 +0.2
5,127,452 + PP_4514 0.46 -0.2
5,127,507 + PP_4514 0.48 +0.2
5,127,508 - PP_4514 0.48 -0.0
5,127,508 - PP_4514 0.48 -0.9
5,127,508 - PP_4514 0.48 +0.1
5,127,508 - PP_4514 0.48 -0.8
5,127,508 - PP_4514 0.48 +1.2
5,127,509 + PP_4514 0.49 +1.0
5,127,510 - PP_4514 0.49 -3.1
5,127,566 + PP_4514 0.51 -0.9
5,127,566 + PP_4514 0.51 -0.2
5,127,574 - PP_4514 0.51 +0.3
5,127,574 - PP_4514 0.51 -3.9
5,127,585 + PP_4514 0.52 +0.3
5,127,586 - PP_4514 0.52 -2.2
5,127,603 + PP_4514 0.53 +1.9
5,127,603 + PP_4514 0.53 -3.7
5,127,603 + PP_4514 0.53 -2.6
5,127,675 + PP_4514 0.56 +0.4
5,127,676 - PP_4514 0.56 +1.6
5,127,819 + PP_4514 0.63 +0.0
5,127,831 + PP_4514 0.63 -2.6
5,127,832 - PP_4514 0.63 -4.2
5,127,832 - PP_4514 0.63 -2.3
5,127,832 - PP_4514 0.63 -0.7
5,127,832 - PP_4514 0.63 -1.2
5,127,832 - PP_4514 0.63 +1.6
5,127,859 - PP_4514 0.65 -2.0
5,127,873 + PP_4514 0.65 -4.0
5,127,949 - PP_4514 0.69 -0.8
5,127,967 + PP_4514 0.69 -0.2
5,127,968 - PP_4514 0.70 -0.6
5,128,099 - PP_4514 0.75 +0.6
5,128,125 + PP_4514 0.77 -0.6
5,128,125 + PP_4514 0.77 -2.6
5,128,125 + PP_4514 0.77 -0.2
5,128,126 - PP_4514 0.77 +0.6
5,128,126 - PP_4514 0.77 -1.1
5,128,171 - PP_4514 0.79 +1.3
5,128,272 + PP_4514 0.83 -0.1
5,128,273 - PP_4514 0.83 +1.5
5,128,398 + PP_4514 0.89 -2.0
5,128,398 + PP_4514 0.89 -1.7
5,128,398 + PP_4514 0.89 -2.0
5,128,399 - PP_4514 0.89 -2.3
5,128,399 - PP_4514 0.89 -3.4
5,128,399 - PP_4514 0.89 +1.4
5,128,399 - PP_4514 0.89 -2.6
5,128,425 + -2.6
5,128,425 + -0.7
5,128,425 + -1.3
5,128,449 + -0.8
5,128,450 - -4.3
5,128,512 + +1.4
5,128,512 + +1.5
5,128,513 - -0.2
5,128,556 - -1.1
5,128,556 - -2.9
5,128,575 + -0.6
5,128,608 + -2.3
5,128,711 + PP_4515 0.10 +2.2
5,128,712 - PP_4515 0.10 +3.7
5,128,754 + PP_4515 0.20 +1.4
5,128,754 + PP_4515 0.20 +3.3
5,128,817 + PP_4515 0.34 +2.8
5,128,817 + PP_4515 0.34 +3.6
5,128,818 - PP_4515 0.34 +3.1
5,128,818 - PP_4515 0.34 +3.2
5,128,818 - PP_4515 0.34 +3.1
5,128,818 - PP_4515 0.34 +3.7
5,128,922 + PP_4515 0.58 +3.4
5,128,922 + PP_4515 0.58 +3.7
5,128,922 + PP_4515 0.58 +3.9
5,128,923 - PP_4515 0.58 +1.2
5,128,923 - PP_4515 0.58 +2.2
5,128,923 - PP_4515 0.58 +2.4
5,129,104 + +2.1
5,129,104 + +3.2
5,129,121 + +4.3
5,129,121 + +3.0
5,129,121 + +3.8
5,129,127 + +2.8
5,129,127 + +2.2
5,129,128 - -0.2
5,129,131 + +3.2
5,129,135 - -0.6
5,129,158 + +2.6
5,129,193 + +1.7
5,129,296 + +1.8
5,129,296 + +1.4
5,129,297 - -2.5
5,129,297 - -1.8
5,129,297 - -0.4
5,129,301 + -2.0
5,129,301 + -1.8
5,129,301 + +1.4
5,129,301 + +1.9
5,129,302 - -4.2
5,129,302 - -2.3
5,129,471 + PP_4516 0.10 -0.8
5,129,472 - PP_4516 0.10 +1.0
5,129,472 - PP_4516 0.10 +3.3
5,129,473 + PP_4516 0.10 -2.5
5,129,473 + PP_4516 0.10 +0.1
5,129,473 + PP_4516 0.10 -1.4
5,129,473 + PP_4516 0.10 +2.8
5,129,473 + PP_4516 0.10 +2.1
5,129,473 + PP_4516 0.10 +0.7
5,129,473 + PP_4516 0.10 +0.1
5,129,474 - PP_4516 0.10 -0.6
5,129,474 - PP_4516 0.10 -1.6
5,129,474 - PP_4516 0.10 +2.2
5,129,474 - PP_4516 0.10 -2.2
5,129,474 - PP_4516 0.10 -1.8
5,129,474 - PP_4516 0.10 -3.5
5,129,474 - PP_4516 0.10 +0.2
5,129,632 + PP_4516 0.18 +0.0

Or see this region's nucleotide sequence