Strain Fitness in Pseudomonas putida KT2440 around PP_0828

Experiment: ferulate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0826 and PP_0827 overlap by 4 nucleotidesPP_0827 and PP_0828 are separated by 36 nucleotidesPP_0828 and PP_0829 are separated by 318 nucleotidesPP_0829 and PP_0830 are separated by 10 nucleotides PP_0826: PP_0826 - phosphonate ABC transporter, permease protein, at 964,195 to 965,022 _0826 PP_0827: PP_0827 - putative phosphonate transport system permease protein PtxC, at 965,019 to 965,786 _0827 PP_0828: PP_0828 - conserved membrane protein of unknown function, at 965,823 to 966,716 _0828 PP_0829: PP_0829 - conserved protein of unknown function, at 967,035 to 967,331 _0829 PP_0830: PP_0830 - Acetyltransferase, GNAT family, at 967,342 to 967,821 _0830 Position (kb) 965 966 967Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 964.823 kb on - strand, within PP_0826at 964.831 kb on + strand, within PP_0826at 965.085 kb on + strandat 965.580 kb on - strand, within PP_0827at 965.664 kb on + strand, within PP_0827at 965.664 kb on + strand, within PP_0827at 965.664 kb on + strand, within PP_0827at 965.717 kb on + strandat 965.717 kb on + strandat 965.896 kb on - strandat 965.900 kb on + strandat 965.900 kb on + strandat 965.900 kb on + strandat 965.901 kb on - strandat 965.901 kb on - strandat 965.901 kb on - strandat 965.901 kb on - strandat 966.083 kb on - strand, within PP_0828at 966.083 kb on - strand, within PP_0828at 966.088 kb on + strand, within PP_0828at 966.088 kb on + strand, within PP_0828at 966.088 kb on + strand, within PP_0828at 966.089 kb on - strand, within PP_0828at 966.089 kb on - strand, within PP_0828at 966.089 kb on - strand, within PP_0828at 966.107 kb on + strand, within PP_0828at 966.150 kb on + strand, within PP_0828at 966.151 kb on - strand, within PP_0828at 966.151 kb on - strand, within PP_0828at 966.206 kb on - strand, within PP_0828at 966.358 kb on + strand, within PP_0828at 966.366 kb on - strand, within PP_0828at 966.664 kb on + strandat 966.665 kb on - strandat 966.851 kb on + strandat 966.852 kb on - strandat 966.852 kb on - strandat 966.852 kb on - strandat 966.852 kb on - strandat 966.909 kb on - strandat 966.980 kb on + strandat 966.981 kb on - strandat 967.101 kb on + strand, within PP_0829at 967.101 kb on + strand, within PP_0829at 967.102 kb on - strand, within PP_0829at 967.102 kb on - strand, within PP_0829at 967.106 kb on + strand, within PP_0829at 967.118 kb on - strand, within PP_0829at 967.118 kb on - strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.187 kb on + strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.188 kb on - strand, within PP_0829at 967.224 kb on + strand, within PP_0829at 967.225 kb on - strand, within PP_0829at 967.225 kb on - strand, within PP_0829at 967.225 kb on - strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.267 kb on + strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.268 kb on - strand, within PP_0829at 967.343 kb on + strandat 967.351 kb on + strandat 967.351 kb on + strandat 967.352 kb on - strandat 967.352 kb on - strandat 967.499 kb on + strand, within PP_0830at 967.499 kb on + strand, within PP_0830at 967.500 kb on - strand, within PP_0830at 967.500 kb on - strand, within PP_0830at 967.500 kb on - strand, within PP_0830at 967.547 kb on - strand, within PP_0830at 967.547 kb on - strand, within PP_0830at 967.579 kb on + strand, within PP_0830at 967.597 kb on + strand, within PP_0830at 967.597 kb on + strand, within PP_0830at 967.598 kb on - strand, within PP_0830at 967.598 kb on - strand, within PP_0830at 967.598 kb on - strand, within PP_0830

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Per-strain Table

Position Strand Gene LocusTag Fraction ferulate (C); with MOPS
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964,823 - PP_0826 0.76 -3.6
964,831 + PP_0826 0.77 -0.3
965,085 + +0.8
965,580 - PP_0827 0.73 +1.3
965,664 + PP_0827 0.84 -0.6
965,664 + PP_0827 0.84 -0.9
965,664 + PP_0827 0.84 -0.6
965,717 + -1.1
965,717 + +0.5
965,896 - -1.1
965,900 + +2.6
965,900 + +1.0
965,900 + -0.2
965,901 - -1.5
965,901 - +1.7
965,901 - +2.7
965,901 - -2.0
966,083 - PP_0828 0.29 +1.0
966,083 - PP_0828 0.29 +1.0
966,088 + PP_0828 0.30 -0.1
966,088 + PP_0828 0.30 +2.0
966,088 + PP_0828 0.30 -2.4
966,089 - PP_0828 0.30 +0.3
966,089 - PP_0828 0.30 -0.5
966,089 - PP_0828 0.30 +1.8
966,107 + PP_0828 0.32 -1.5
966,150 + PP_0828 0.37 +2.1
966,151 - PP_0828 0.37 -3.3
966,151 - PP_0828 0.37 -0.5
966,206 - PP_0828 0.43 +2.7
966,358 + PP_0828 0.60 +1.3
966,366 - PP_0828 0.61 +1.5
966,664 + +3.4
966,665 - -0.6
966,851 + -1.8
966,852 - +1.2
966,852 - -2.7
966,852 - -0.5
966,852 - -0.0
966,909 - -0.5
966,980 + +0.1
966,981 - +1.0
967,101 + PP_0829 0.22 +1.6
967,101 + PP_0829 0.22 -2.4
967,102 - PP_0829 0.23 +1.8
967,102 - PP_0829 0.23 -2.5
967,106 + PP_0829 0.24 -0.8
967,118 - PP_0829 0.28 -2.8
967,118 - PP_0829 0.28 +2.0
967,187 + PP_0829 0.51 -0.0
967,187 + PP_0829 0.51 -2.4
967,187 + PP_0829 0.51 +0.2
967,187 + PP_0829 0.51 -0.3
967,187 + PP_0829 0.51 -0.4
967,187 + PP_0829 0.51 +2.0
967,187 + PP_0829 0.51 +1.0
967,187 + PP_0829 0.51 -0.9
967,188 - PP_0829 0.52 +2.9
967,188 - PP_0829 0.52 +1.3
967,188 - PP_0829 0.52 -2.5
967,188 - PP_0829 0.52 -2.8
967,188 - PP_0829 0.52 +2.0
967,188 - PP_0829 0.52 +0.0
967,188 - PP_0829 0.52 -1.4
967,188 - PP_0829 0.52 +1.3
967,188 - PP_0829 0.52 +2.7
967,188 - PP_0829 0.52 -0.2
967,224 + PP_0829 0.64 -1.8
967,225 - PP_0829 0.64 -2.4
967,225 - PP_0829 0.64 +1.1
967,225 - PP_0829 0.64 -1.0
967,267 + PP_0829 0.78 +2.0
967,267 + PP_0829 0.78 -1.5
967,267 + PP_0829 0.78 -1.3
967,267 + PP_0829 0.78 +0.6
967,267 + PP_0829 0.78 +0.8
967,267 + PP_0829 0.78 -3.9
967,267 + PP_0829 0.78 -0.5
967,267 + PP_0829 0.78 +1.2
967,268 - PP_0829 0.78 -2.5
967,268 - PP_0829 0.78 -0.4
967,268 - PP_0829 0.78 -4.0
967,268 - PP_0829 0.78 -2.0
967,268 - PP_0829 0.78 +0.5
967,343 + -0.7
967,351 + +1.1
967,351 + -0.7
967,352 - +0.6
967,352 - -0.3
967,499 + PP_0830 0.33 +1.4
967,499 + PP_0830 0.33 +0.1
967,500 - PP_0830 0.33 +1.0
967,500 - PP_0830 0.33 +0.4
967,500 - PP_0830 0.33 +0.7
967,547 - PP_0830 0.43 +1.4
967,547 - PP_0830 0.43 +0.6
967,579 + PP_0830 0.49 +1.8
967,597 + PP_0830 0.53 +1.4
967,597 + PP_0830 0.53 +0.4
967,598 - PP_0830 0.53 -1.4
967,598 - PP_0830 0.53 +1.9
967,598 - PP_0830 0.53 -2.2

Or see this region's nucleotide sequence