Strain Fitness in Pseudomonas putida KT2440 around PP_0355

Experiment: ferulate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0354 and PP_0355 are separated by 92 nucleotidesPP_0355 and PP_0356 are separated by 46 nucleotides PP_0354: PP_0354 - CBS domain protein, at 430,376 to 432,313 _0354 PP_0355: PP_0355 - Response regulator, at 432,406 to 432,975 _0355 PP_0356: PP_0356 - malate synthase G, at 433,022 to 435,199 _0356 Position (kb) 432 433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 431.497 kb on + strand, within PP_0354at 431.498 kb on - strand, within PP_0354at 431.498 kb on - strand, within PP_0354at 431.553 kb on + strand, within PP_0354at 431.553 kb on + strand, within PP_0354at 431.602 kb on + strand, within PP_0354at 431.602 kb on + strand, within PP_0354at 431.603 kb on - strand, within PP_0354at 431.603 kb on - strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.606 kb on + strand, within PP_0354at 431.607 kb on - strand, within PP_0354at 431.607 kb on - strand, within PP_0354at 431.607 kb on - strand, within PP_0354at 431.647 kb on + strand, within PP_0354at 431.648 kb on - strand, within PP_0354at 431.649 kb on - strand, within PP_0354at 431.831 kb on + strand, within PP_0354at 431.832 kb on - strand, within PP_0354at 431.832 kb on - strand, within PP_0354at 432.105 kb on + strand, within PP_0354at 432.105 kb on + strand, within PP_0354at 432.105 kb on + strand, within PP_0354at 432.106 kb on - strand, within PP_0354at 432.106 kb on - strand, within PP_0354at 432.159 kb on + strandat 432.160 kb on - strandat 432.160 kb on - strandat 432.344 kb on - strandat 432.345 kb on + strandat 432.345 kb on + strandat 432.346 kb on - strandat 432.346 kb on - strandat 432.346 kb on - strandat 432.346 kb on - strandat 432.347 kb on + strandat 432.347 kb on + strandat 432.347 kb on + strandat 432.347 kb on + strandat 432.348 kb on - strandat 432.348 kb on - strandat 432.348 kb on - strandat 432.351 kb on + strandat 432.351 kb on + strandat 432.351 kb on + strandat 432.351 kb on + strandat 432.352 kb on - strandat 432.352 kb on - strandat 432.354 kb on - strandat 432.354 kb on - strandat 432.355 kb on + strandat 432.356 kb on - strandat 432.357 kb on + strandat 432.357 kb on + strandat 432.357 kb on + strandat 432.423 kb on + strandat 432.423 kb on + strandat 432.423 kb on + strandat 432.424 kb on - strandat 432.424 kb on - strandat 432.424 kb on - strandat 432.429 kb on + strandat 432.429 kb on + strandat 432.430 kb on - strandat 432.430 kb on - strandat 432.430 kb on - strandat 432.491 kb on + strand, within PP_0355at 432.491 kb on + strand, within PP_0355at 432.491 kb on + strand, within PP_0355at 432.492 kb on - strand, within PP_0355at 432.724 kb on + strand, within PP_0355at 432.725 kb on - strand, within PP_0355at 432.733 kb on + strand, within PP_0355at 432.734 kb on - strand, within PP_0355at 432.744 kb on + strand, within PP_0355at 432.745 kb on - strand, within PP_0355at 432.759 kb on + strand, within PP_0355at 432.993 kb on - strandat 432.993 kb on - strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.023 kb on + strandat 433.024 kb on - strandat 433.024 kb on - strandat 433.024 kb on - strandat 433.024 kb on - strandat 433.110 kb on - strandat 433.110 kb on - strandat 433.171 kb on - strandat 433.526 kb on + strand, within PP_0356at 433.527 kb on - strand, within PP_0356at 433.543 kb on - strand, within PP_0356at 433.894 kb on + strand, within PP_0356

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Per-strain Table

Position Strand Gene LocusTag Fraction ferulate (C); with MOPS
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431,497 + PP_0354 0.58 +1.7
431,498 - PP_0354 0.58 +1.4
431,498 - PP_0354 0.58 -1.9
431,553 + PP_0354 0.61 +3.4
431,553 + PP_0354 0.61 +1.0
431,602 + PP_0354 0.63 +1.4
431,602 + PP_0354 0.63 +1.0
431,603 - PP_0354 0.63 +2.0
431,603 - PP_0354 0.63 +2.0
431,606 + PP_0354 0.63 +1.8
431,606 + PP_0354 0.63 +0.1
431,606 + PP_0354 0.63 +2.7
431,606 + PP_0354 0.63 +2.2
431,606 + PP_0354 0.63 +1.1
431,607 - PP_0354 0.64 +2.4
431,607 - PP_0354 0.64 +1.0
431,607 - PP_0354 0.64 -1.0
431,647 + PP_0354 0.66 +1.4
431,648 - PP_0354 0.66 +1.4
431,649 - PP_0354 0.66 -0.2
431,831 + PP_0354 0.75 +2.5
431,832 - PP_0354 0.75 -1.7
431,832 - PP_0354 0.75 -0.2
432,105 + PP_0354 0.89 -0.2
432,105 + PP_0354 0.89 +3.5
432,105 + PP_0354 0.89 +1.3
432,106 - PP_0354 0.89 -0.2
432,106 - PP_0354 0.89 +0.4
432,159 + +1.8
432,160 - -0.5
432,160 - -2.4
432,344 - -1.0
432,345 + +3.2
432,345 + +3.5
432,346 - -0.8
432,346 - -3.0
432,346 - -0.9
432,346 - -0.9
432,347 + +2.0
432,347 + +2.4
432,347 + +1.5
432,347 + +2.5
432,348 - +1.8
432,348 - +1.6
432,348 - -1.1
432,351 + +1.5
432,351 + +1.2
432,351 + +3.4
432,351 + +2.2
432,352 - -2.3
432,352 - -3.3
432,354 - +0.1
432,354 - +0.7
432,355 + +3.3
432,356 - -0.6
432,357 + +2.5
432,357 + +2.8
432,357 + +2.5
432,423 + +2.3
432,423 + +1.0
432,423 + +2.1
432,424 - -3.7
432,424 - -1.1
432,424 - -0.4
432,429 + -3.4
432,429 + +2.6
432,430 - -2.3
432,430 - -3.1
432,430 - +0.1
432,491 + PP_0355 0.15 +3.7
432,491 + PP_0355 0.15 +4.1
432,491 + PP_0355 0.15 +2.7
432,492 - PP_0355 0.15 -0.4
432,724 + PP_0355 0.56 -1.5
432,725 - PP_0355 0.56 +0.8
432,733 + PP_0355 0.57 -1.4
432,734 - PP_0355 0.58 +4.6
432,744 + PP_0355 0.59 +1.2
432,745 - PP_0355 0.59 +0.9
432,759 + PP_0355 0.62 +0.8
432,993 - -2.6
432,993 - +0.3
433,023 + +1.4
433,023 + -0.4
433,023 + +0.1
433,023 + -0.5
433,023 + -2.8
433,023 + -1.6
433,024 - -1.3
433,024 - +0.7
433,024 - +1.5
433,024 - +1.8
433,110 - -0.9
433,110 - -2.5
433,171 - -3.4
433,526 + PP_0356 0.23 -2.1
433,527 - PP_0356 0.23 -0.9
433,543 - PP_0356 0.24 -2.3
433,894 + PP_0356 0.40 -2.9

Or see this region's nucleotide sequence