Strain Fitness in Pseudomonas putida KT2440 around PP_5084

Experiment: ferulate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5083 and PP_5084 are separated by 203 nucleotidesPP_5084 and PP_5085 are separated by 154 nucleotides PP_5083: PP_5083 - putative Type IV pili biogenesis protein PilM, at 5,804,327 to 5,805,208 _5083 PP_5084: PP_5084 - penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase, at 5,805,412 to 5,807,865 _5084 PP_5085: PP_5085 - malic enzyme B, at 5,808,020 to 5,809,288 _5085 Position (kb) 5805 5806 5807 5808Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5804.412 kb on + strandat 5804.413 kb on - strandat 5804.450 kb on + strand, within PP_5083at 5804.519 kb on + strand, within PP_5083at 5804.790 kb on - strand, within PP_5083at 5804.950 kb on + strand, within PP_5083at 5805.158 kb on - strandat 5805.230 kb on + strandat 5805.230 kb on + strandat 5805.341 kb on + strandat 5805.341 kb on + strandat 5805.342 kb on - strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.343 kb on + strandat 5805.344 kb on - strandat 5805.344 kb on - strandat 5805.344 kb on - strandat 5805.416 kb on + strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.417 kb on - strandat 5805.471 kb on - strandat 5805.496 kb on + strandat 5805.497 kb on - strandat 5805.497 kb on - strandat 5805.501 kb on + strandat 5805.566 kb on - strandat 5805.566 kb on - strandat 5805.753 kb on + strand, within PP_5084at 5805.935 kb on - strand, within PP_5084at 5805.935 kb on - strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.961 kb on + strand, within PP_5084at 5805.962 kb on - strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.102 kb on + strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.103 kb on - strand, within PP_5084at 5806.133 kb on - strand, within PP_5084at 5806.168 kb on + strand, within PP_5084at 5806.168 kb on + strand, within PP_5084at 5806.169 kb on - strand, within PP_5084at 5806.169 kb on - strand, within PP_5084at 5806.201 kb on + strandat 5806.201 kb on + strand, within PP_5084at 5806.759 kb on + strandat 5806.759 kb on + strandat 5806.817 kb on - strand, within PP_5084at 5806.841 kb on - strand, within PP_5084at 5806.966 kb on + strand, within PP_5084at 5806.967 kb on - strand, within PP_5084at 5806.967 kb on - strand, within PP_5084at 5806.977 kb on + strand, within PP_5084at 5806.977 kb on + strand, within PP_5084at 5806.977 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.032 kb on + strand, within PP_5084at 5807.033 kb on - strand, within PP_5084at 5807.033 kb on - strand, within PP_5084at 5807.033 kb on - strand, within PP_5084at 5807.155 kb on + strand, within PP_5084at 5807.155 kb on + strand, within PP_5084at 5807.155 kb on + strand, within PP_5084at 5807.156 kb on - strand, within PP_5084at 5807.156 kb on - strand, within PP_5084at 5807.171 kb on - strand, within PP_5084at 5807.385 kb on + strand, within PP_5084at 5807.386 kb on - strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.392 kb on + strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.393 kb on - strand, within PP_5084at 5807.524 kb on + strand, within PP_5084at 5807.524 kb on + strand, within PP_5084at 5807.525 kb on - strand, within PP_5084at 5807.525 kb on - strand, within PP_5084at 5807.536 kb on + strand, within PP_5084at 5807.537 kb on - strand, within PP_5084at 5807.537 kb on - strand, within PP_5084at 5807.749 kb on + strandat 5807.863 kb on + strandat 5807.864 kb on - strandat 5807.864 kb on - strandat 5807.864 kb on - strandat 5808.003 kb on + strandat 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.165 kb on + strand, within PP_5085at 5808.166 kb on - strand, within PP_5085at 5808.198 kb on + strand, within PP_5085at 5808.283 kb on + strand, within PP_5085at 5808.283 kb on + strand, within PP_5085at 5808.284 kb on - strand, within PP_5085at 5808.284 kb on - strand, within PP_5085at 5808.284 kb on - strand, within PP_5085at 5808.515 kb on + strand, within PP_5085at 5808.515 kb on + strand, within PP_5085at 5808.515 kb on + strand, within PP_5085at 5808.516 kb on - strand, within PP_5085at 5808.516 kb on - strand, within PP_5085at 5808.588 kb on + strand, within PP_5085at 5808.589 kb on - strand, within PP_5085at 5808.589 kb on - strand, within PP_5085at 5808.628 kb on + strand, within PP_5085at 5808.628 kb on + strand, within PP_5085at 5808.628 kb on + strand, within PP_5085at 5808.671 kb on + strand, within PP_5085at 5808.671 kb on + strand, within PP_5085at 5808.672 kb on - strand, within PP_5085at 5808.672 kb on - strand, within PP_5085at 5808.672 kb on - strand, within PP_5085at 5808.797 kb on - strand, within PP_5085at 5808.847 kb on + strand, within PP_5085

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Per-strain Table

Position Strand Gene LocusTag Fraction ferulate (C); with MOPS
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5,804,412 + +1.2
5,804,413 - +0.9
5,804,450 + PP_5083 0.14 +0.5
5,804,519 + PP_5083 0.22 -0.9
5,804,790 - PP_5083 0.52 +0.6
5,804,950 + PP_5083 0.71 -0.6
5,805,158 - +0.2
5,805,230 + +0.4
5,805,230 + +1.6
5,805,341 + +1.5
5,805,341 + +0.5
5,805,342 - -1.1
5,805,343 + +0.5
5,805,343 + +1.6
5,805,343 + +1.5
5,805,343 + -1.4
5,805,343 + -2.1
5,805,343 + -3.0
5,805,344 - -1.4
5,805,344 - -1.1
5,805,344 - -2.3
5,805,416 + +2.4
5,805,417 - -0.6
5,805,417 - -0.3
5,805,417 - +0.1
5,805,417 - +0.9
5,805,417 - -0.6
5,805,471 - -1.0
5,805,496 + -1.8
5,805,497 - -3.1
5,805,497 - +1.4
5,805,501 + -0.9
5,805,566 - -1.6
5,805,566 - -1.4
5,805,753 + PP_5084 0.14 +0.1
5,805,935 - PP_5084 0.21 -1.8
5,805,935 - PP_5084 0.21 -0.6
5,805,961 + PP_5084 0.22 -2.1
5,805,961 + PP_5084 0.22 -0.9
5,805,961 + PP_5084 0.22 -0.1
5,805,961 + PP_5084 0.22 -1.2
5,805,962 - PP_5084 0.22 -1.2
5,806,102 + PP_5084 0.28 -2.4
5,806,102 + PP_5084 0.28 +1.1
5,806,102 + PP_5084 0.28 -0.8
5,806,102 + PP_5084 0.28 -0.5
5,806,102 + PP_5084 0.28 -0.9
5,806,103 - PP_5084 0.28 -2.6
5,806,103 - PP_5084 0.28 -2.2
5,806,103 - PP_5084 0.28 -2.1
5,806,103 - PP_5084 0.28 -1.7
5,806,103 - PP_5084 0.28 -1.7
5,806,133 - PP_5084 0.29 +0.1
5,806,168 + PP_5084 0.31 -1.4
5,806,168 + PP_5084 0.31 -1.0
5,806,169 - PP_5084 0.31 -0.4
5,806,169 - PP_5084 0.31 -1.6
5,806,201 + -0.6
5,806,201 + PP_5084 0.32 -1.2
5,806,759 + -0.4
5,806,759 + +1.3
5,806,817 - PP_5084 0.57 -0.9
5,806,841 - PP_5084 0.58 -0.4
5,806,966 + PP_5084 0.63 +0.4
5,806,967 - PP_5084 0.63 -1.5
5,806,967 - PP_5084 0.63 +0.2
5,806,977 + PP_5084 0.64 -2.1
5,806,977 + PP_5084 0.64 -2.8
5,806,977 + PP_5084 0.64 -1.0
5,807,032 + PP_5084 0.66 -1.9
5,807,032 + PP_5084 0.66 -0.4
5,807,032 + PP_5084 0.66 -2.3
5,807,032 + PP_5084 0.66 -2.1
5,807,032 + PP_5084 0.66 -1.4
5,807,033 - PP_5084 0.66 +0.3
5,807,033 - PP_5084 0.66 -2.4
5,807,033 - PP_5084 0.66 -3.3
5,807,155 + PP_5084 0.71 -2.9
5,807,155 + PP_5084 0.71 -1.6
5,807,155 + PP_5084 0.71 -1.1
5,807,156 - PP_5084 0.71 -1.8
5,807,156 - PP_5084 0.71 -1.1
5,807,171 - PP_5084 0.72 -1.6
5,807,385 + PP_5084 0.80 +0.4
5,807,386 - PP_5084 0.80 -0.8
5,807,392 + PP_5084 0.81 -2.5
5,807,392 + PP_5084 0.81 -1.3
5,807,392 + PP_5084 0.81 +1.9
5,807,392 + PP_5084 0.81 -1.2
5,807,392 + PP_5084 0.81 -1.9
5,807,393 - PP_5084 0.81 -1.8
5,807,393 - PP_5084 0.81 +0.7
5,807,393 - PP_5084 0.81 -0.4
5,807,393 - PP_5084 0.81 -1.4
5,807,393 - PP_5084 0.81 -2.2
5,807,524 + PP_5084 0.86 -2.2
5,807,524 + PP_5084 0.86 -1.4
5,807,525 - PP_5084 0.86 -2.8
5,807,525 - PP_5084 0.86 -2.4
5,807,536 + PP_5084 0.87 -1.0
5,807,537 - PP_5084 0.87 -1.8
5,807,537 - PP_5084 0.87 -1.0
5,807,749 + -2.0
5,807,863 + +2.1
5,807,864 - -0.3
5,807,864 - -1.7
5,807,864 - -0.8
5,808,003 + -0.8
5,808,165 + PP_5085 0.11 +1.7
5,808,165 + PP_5085 0.11 -0.8
5,808,165 + PP_5085 0.11 -1.6
5,808,165 + PP_5085 0.11 -1.6
5,808,165 + PP_5085 0.11 +0.7
5,808,166 - PP_5085 0.12 -0.8
5,808,198 + PP_5085 0.14 -1.1
5,808,283 + PP_5085 0.21 -0.8
5,808,283 + PP_5085 0.21 +0.8
5,808,284 - PP_5085 0.21 -0.7
5,808,284 - PP_5085 0.21 -0.1
5,808,284 - PP_5085 0.21 +2.5
5,808,515 + PP_5085 0.39 -1.5
5,808,515 + PP_5085 0.39 -1.3
5,808,515 + PP_5085 0.39 +0.0
5,808,516 - PP_5085 0.39 -0.9
5,808,516 - PP_5085 0.39 -1.9
5,808,588 + PP_5085 0.45 -0.6
5,808,589 - PP_5085 0.45 -0.0
5,808,589 - PP_5085 0.45 +1.6
5,808,628 + PP_5085 0.48 -2.1
5,808,628 + PP_5085 0.48 -2.2
5,808,628 + PP_5085 0.48 -0.8
5,808,671 + PP_5085 0.51 -2.6
5,808,671 + PP_5085 0.51 -1.0
5,808,672 - PP_5085 0.51 +1.3
5,808,672 - PP_5085 0.51 -2.6
5,808,672 - PP_5085 0.51 +0.5
5,808,797 - PP_5085 0.61 +1.0
5,808,847 + PP_5085 0.65 -0.5

Or see this region's nucleotide sequence