Experiment: ferulate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4686 and PP_4687 are separated by 102 nucleotides PP_4687 and PP_4688 overlap by 1 nucleotides PP_4688 and PP_4689 overlap by 4 nucleotides
PP_4686: PP_4686 - putative lipoprotein, at 5,325,547 to 5,326,431
_4686
PP_4687: PP_4687 - Hemin import ATP-binding protein HmuV, at 5,326,534 to 5,327,301
_4687
PP_4688: PP_4688 - Heme/hemin ABC transporter, permease protein, at 5,327,301 to 5,328,338
_4688
PP_4689: PP_4689 - Heme/hemin ABC transporter, periplasmic heme/hemin-binding protein, at 5,328,335 to 5,329,219
_4689
Position (kb) 5327
5328
5329 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5326.381 kb on + strand at 5326.390 kb on + strand at 5326.439 kb on + strand at 5326.439 kb on + strand at 5326.439 kb on + strand at 5326.440 kb on - strand at 5326.440 kb on - strand at 5326.440 kb on - strand at 5326.460 kb on + strand at 5326.460 kb on + strand at 5326.461 kb on - strand at 5326.461 kb on - strand at 5326.585 kb on + strand at 5326.585 kb on + strand at 5326.585 kb on + strand at 5326.585 kb on + strand at 5326.598 kb on + strand at 5326.598 kb on + strand at 5326.599 kb on - strand at 5326.599 kb on - strand at 5326.599 kb on - strand at 5326.599 kb on - strand at 5326.680 kb on + strand, within PP_4687 at 5326.759 kb on + strand, within PP_4687 at 5326.760 kb on - strand, within PP_4687 at 5326.760 kb on - strand, within PP_4687 at 5326.849 kb on + strand, within PP_4687 at 5326.849 kb on + strand, within PP_4687 at 5326.850 kb on - strand, within PP_4687 at 5326.850 kb on - strand, within PP_4687 at 5326.911 kb on - strand, within PP_4687 at 5327.279 kb on + strand at 5327.279 kb on + strand at 5327.280 kb on - strand at 5327.280 kb on - strand at 5327.280 kb on - strand at 5327.280 kb on - strand at 5327.280 kb on - strand at 5327.280 kb on - strand at 5327.363 kb on + strand at 5327.363 kb on + strand at 5327.505 kb on + strand, within PP_4688 at 5327.703 kb on + strand, within PP_4688 at 5327.703 kb on + strand, within PP_4688 at 5327.722 kb on + strand at 5327.847 kb on + strand, within PP_4688 at 5327.847 kb on + strand, within PP_4688 at 5327.848 kb on - strand, within PP_4688 at 5327.848 kb on - strand, within PP_4688 at 5327.848 kb on - strand, within PP_4688 at 5327.848 kb on - strand, within PP_4688 at 5327.893 kb on + strand, within PP_4688 at 5327.908 kb on - strand, within PP_4688 at 5327.945 kb on + strand, within PP_4688 at 5327.947 kb on + strand, within PP_4688 at 5328.302 kb on + strand at 5328.303 kb on - strand at 5328.314 kb on + strand at 5328.314 kb on + strand at 5328.315 kb on - strand at 5328.315 kb on - strand at 5328.315 kb on - strand at 5328.600 kb on + strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5328.601 kb on - strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.054 kb on + strand, within PP_4689 at 5329.055 kb on - strand, within PP_4689 at 5329.279 kb on - strand at 5329.279 kb on - strand at 5329.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ferulate (C); with MOPS remove 5,326,381 + +2.1 5,326,390 + -0.9 5,326,439 + +0.1 5,326,439 + +0.8 5,326,439 + +0.5 5,326,440 - -2.4 5,326,440 - +0.4 5,326,440 - +0.8 5,326,460 + +2.2 5,326,460 + -2.9 5,326,461 - +1.2 5,326,461 - -1.7 5,326,585 + -0.5 5,326,585 + +1.7 5,326,585 + -3.8 5,326,585 + +1.3 5,326,598 + +0.4 5,326,598 + +0.3 5,326,599 - -1.5 5,326,599 - +1.5 5,326,599 - -1.9 5,326,599 - +0.6 5,326,680 + PP_4687 0.19 +1.4 5,326,759 + PP_4687 0.29 -2.4 5,326,760 - PP_4687 0.29 +2.0 5,326,760 - PP_4687 0.29 -2.3 5,326,849 + PP_4687 0.41 -2.9 5,326,849 + PP_4687 0.41 +0.0 5,326,850 - PP_4687 0.41 -0.2 5,326,850 - PP_4687 0.41 +0.6 5,326,911 - PP_4687 0.49 -0.4 5,327,279 + -0.2 5,327,279 + -0.1 5,327,280 - +1.9 5,327,280 - +0.8 5,327,280 - +0.0 5,327,280 - -2.4 5,327,280 - -1.2 5,327,280 - +1.7 5,327,363 + -0.8 5,327,363 + -0.0 5,327,505 + PP_4688 0.20 -0.1 5,327,703 + PP_4688 0.39 -2.8 5,327,703 + PP_4688 0.39 +0.9 5,327,722 + -0.8 5,327,847 + PP_4688 0.53 -2.4 5,327,847 + PP_4688 0.53 +1.9 5,327,848 - PP_4688 0.53 +1.5 5,327,848 - PP_4688 0.53 +1.2 5,327,848 - PP_4688 0.53 +0.4 5,327,848 - PP_4688 0.53 +1.9 5,327,893 + PP_4688 0.57 -2.2 5,327,908 - PP_4688 0.58 +2.2 5,327,945 + PP_4688 0.62 -0.5 5,327,947 + PP_4688 0.62 +0.8 5,328,302 + -0.5 5,328,303 - +1.2 5,328,314 + +1.9 5,328,314 + -2.9 5,328,315 - +0.0 5,328,315 - -1.0 5,328,315 - +1.4 5,328,600 + PP_4689 0.30 -0.4 5,328,601 - PP_4689 0.30 -2.0 5,328,601 - PP_4689 0.30 -0.9 5,328,601 - PP_4689 0.30 -2.2 5,328,601 - PP_4689 0.30 -1.7 5,329,054 + PP_4689 0.81 +0.5 5,329,054 + PP_4689 0.81 +1.7 5,329,054 + PP_4689 0.81 -0.2 5,329,054 + PP_4689 0.81 -0.5 5,329,054 + PP_4689 0.81 +2.6 5,329,055 - PP_4689 0.81 +0.1 5,329,279 - +0.1 5,329,279 - -0.5 5,329,279 - +0.7
Or see this region's nucleotide sequence