Experiment: ferulate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0824 and PP_0825 overlap by 4 nucleotides PP_0825 and PP_0826 overlap by 7 nucleotides PP_0826 and PP_0827 overlap by 4 nucleotides PP_0827 and PP_0828 are separated by 36 nucleotides
PP_0824: PP_0824 - phosphonate transport system-binding protein, at 962,541 to 963,395
_0824
PP_0825: PP_0825 - phosphonates import ATP-binding protein, at 963,392 to 964,201
_0825
PP_0826: PP_0826 - phosphonate ABC transporter, permease protein, at 964,195 to 965,022
_0826
PP_0827: PP_0827 - putative phosphonate transport system permease protein PtxC, at 965,019 to 965,786
_0827
PP_0828: PP_0828 - conserved membrane protein of unknown function, at 965,823 to 966,716
_0828
Position (kb) 964
965
966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 963.199 kb on - strand, within PP_0824 at 963.290 kb on + strand, within PP_0824 at 963.291 kb on - strand, within PP_0824 at 963.348 kb on + strand at 963.348 kb on + strand at 963.348 kb on + strand at 963.348 kb on + strand at 963.349 kb on - strand at 963.349 kb on - strand at 963.349 kb on - strand at 963.349 kb on - strand at 963.422 kb on + strand at 963.450 kb on + strand at 963.479 kb on - strand, within PP_0825 at 963.887 kb on + strand, within PP_0825 at 963.887 kb on + strand, within PP_0825 at 963.955 kb on + strand, within PP_0825 at 963.956 kb on - strand, within PP_0825 at 963.956 kb on - strand, within PP_0825 at 964.023 kb on + strand, within PP_0825 at 964.265 kb on + strand at 964.266 kb on - strand at 964.399 kb on + strand, within PP_0826 at 964.400 kb on - strand, within PP_0826 at 964.407 kb on + strand, within PP_0826 at 964.587 kb on + strand, within PP_0826 at 964.588 kb on - strand, within PP_0826 at 964.588 kb on - strand, within PP_0826 at 964.655 kb on + strand, within PP_0826 at 964.656 kb on - strand, within PP_0826 at 964.675 kb on + strand at 964.675 kb on + strand, within PP_0826 at 964.675 kb on + strand, within PP_0826 at 964.675 kb on + strand, within PP_0826 at 964.676 kb on - strand, within PP_0826 at 964.676 kb on - strand, within PP_0826 at 964.700 kb on - strand, within PP_0826 at 964.784 kb on - strand, within PP_0826 at 964.822 kb on + strand, within PP_0826 at 964.822 kb on + strand, within PP_0826 at 964.823 kb on - strand, within PP_0826 at 964.831 kb on + strand, within PP_0826 at 965.085 kb on + strand at 965.580 kb on - strand, within PP_0827 at 965.664 kb on + strand, within PP_0827 at 965.664 kb on + strand, within PP_0827 at 965.664 kb on + strand, within PP_0827 at 965.717 kb on + strand at 965.717 kb on + strand at 965.896 kb on - strand at 965.900 kb on + strand at 965.900 kb on + strand at 965.900 kb on + strand at 965.901 kb on - strand at 965.901 kb on - strand at 965.901 kb on - strand at 965.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ferulate (C); with MOPS remove 963,199 - PP_0824 0.77 -2.1 963,290 + PP_0824 0.88 +0.2 963,291 - PP_0824 0.88 -1.3 963,348 + +1.3 963,348 + -0.9 963,348 + -1.2 963,348 + +0.6 963,349 - -0.3 963,349 - +0.2 963,349 - -2.8 963,349 - +0.8 963,422 + -1.2 963,450 + -0.5 963,479 - PP_0825 0.11 -1.3 963,887 + PP_0825 0.61 +0.2 963,887 + PP_0825 0.61 -2.0 963,955 + PP_0825 0.70 -1.5 963,956 - PP_0825 0.70 -3.5 963,956 - PP_0825 0.70 -0.4 964,023 + PP_0825 0.78 -0.8 964,265 + +0.0 964,266 - +1.2 964,399 + PP_0826 0.25 -0.3 964,400 - PP_0826 0.25 -2.2 964,407 + PP_0826 0.26 +0.9 964,587 + PP_0826 0.47 -0.0 964,588 - PP_0826 0.47 +1.0 964,588 - PP_0826 0.47 +0.1 964,655 + PP_0826 0.56 -1.9 964,656 - PP_0826 0.56 +1.4 964,675 + +1.0 964,675 + PP_0826 0.58 -1.0 964,675 + PP_0826 0.58 -2.4 964,675 + PP_0826 0.58 +1.9 964,676 - PP_0826 0.58 -2.4 964,676 - PP_0826 0.58 +1.6 964,700 - PP_0826 0.61 -0.2 964,784 - PP_0826 0.71 +1.4 964,822 + PP_0826 0.76 -0.8 964,822 + PP_0826 0.76 +2.6 964,823 - PP_0826 0.76 -1.3 964,831 + PP_0826 0.77 +0.2 965,085 + -2.0 965,580 - PP_0827 0.73 -1.2 965,664 + PP_0827 0.84 +1.9 965,664 + PP_0827 0.84 +0.5 965,664 + PP_0827 0.84 -1.4 965,717 + -0.6 965,717 + +0.3 965,896 - +0.5 965,900 + -1.8 965,900 + +0.2 965,900 + +1.2 965,901 - +0.1 965,901 - +0.6 965,901 - +2.5 965,901 - -2.0
Or see this region's nucleotide sequence