Experiment: ferulate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0350 and PP_0351 are separated by 251 nucleotides PP_0351 and PP_0352 overlap by 4 nucleotides PP_0352 and PP_0353 are separated by 147 nucleotides
PP_0350: PP_0350 - Outer membrane ferrichrome-iron receptor, at 425,366 to 427,798
_0350
PP_0351: PP_0351 - putative Transmembrane sensor protein, at 428,050 to 429,006
_0351
PP_0352: PP_0352 - RNA polymerase sigma-70 factor, ECF subfamily, at 429,003 to 429,521
_0352
PP_0353: PP_0353 - Exonuclease, at 429,669 to 430,379
_0353
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.134 kb on + strand, within PP_0350 at 427.135 kb on - strand, within PP_0350 at 427.213 kb on + strand, within PP_0350 at 427.249 kb on + strand, within PP_0350 at 427.251 kb on + strand, within PP_0350 at 427.251 kb on + strand, within PP_0350 at 427.251 kb on + strand, within PP_0350 at 427.251 kb on + strand, within PP_0350 at 427.252 kb on - strand, within PP_0350 at 427.252 kb on - strand, within PP_0350 at 427.383 kb on + strand, within PP_0350 at 427.383 kb on + strand, within PP_0350 at 427.384 kb on - strand, within PP_0350 at 427.482 kb on + strand, within PP_0350 at 427.482 kb on + strand, within PP_0350 at 427.482 kb on + strand, within PP_0350 at 427.483 kb on - strand, within PP_0350 at 427.558 kb on - strand at 427.558 kb on - strand at 427.680 kb on + strand at 427.680 kb on + strand at 427.681 kb on - strand at 427.777 kb on + strand at 427.777 kb on + strand at 427.777 kb on + strand at 427.778 kb on - strand at 427.778 kb on - strand at 427.973 kb on + strand at 427.973 kb on + strand at 427.996 kb on - strand at 428.051 kb on + strand at 428.051 kb on + strand at 428.082 kb on + strand at 428.082 kb on + strand at 428.083 kb on - strand at 428.083 kb on - strand at 428.248 kb on + strand, within PP_0351 at 428.248 kb on + strand, within PP_0351 at 428.248 kb on + strand, within PP_0351 at 428.249 kb on - strand, within PP_0351 at 428.249 kb on - strand, within PP_0351 at 428.249 kb on - strand, within PP_0351 at 428.425 kb on - strand, within PP_0351 at 428.492 kb on - strand, within PP_0351 at 428.577 kb on - strand, within PP_0351 at 428.645 kb on - strand, within PP_0351 at 428.645 kb on - strand, within PP_0351 at 428.645 kb on - strand, within PP_0351 at 428.682 kb on - strand, within PP_0351 at 428.682 kb on - strand, within PP_0351 at 429.031 kb on + strand at 429.031 kb on + strand at 429.031 kb on + strand at 429.032 kb on - strand at 429.032 kb on - strand at 429.032 kb on - strand at 429.058 kb on + strand, within PP_0352 at 429.059 kb on - strand, within PP_0352 at 429.268 kb on + strand, within PP_0352 at 429.268 kb on + strand, within PP_0352 at 429.268 kb on + strand, within PP_0352 at 429.476 kb on - strand at 429.641 kb on + strand at 429.642 kb on - strand at 429.664 kb on + strand at 429.665 kb on - strand at 429.670 kb on + strand at 429.670 kb on + strand at 429.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ferulate (C); with MOPS remove 427,134 + PP_0350 0.73 -0.4 427,134 + PP_0350 0.73 -1.1 427,134 + PP_0350 0.73 +1.3 427,134 + PP_0350 0.73 +0.0 427,134 + PP_0350 0.73 +0.9 427,134 + PP_0350 0.73 -3.1 427,135 - PP_0350 0.73 +1.8 427,213 + PP_0350 0.76 +0.8 427,249 + PP_0350 0.77 +1.0 427,251 + PP_0350 0.77 +1.6 427,251 + PP_0350 0.77 -0.6 427,251 + PP_0350 0.77 -1.1 427,251 + PP_0350 0.77 +0.6 427,252 - PP_0350 0.78 +0.7 427,252 - PP_0350 0.78 -3.2 427,383 + PP_0350 0.83 -0.2 427,383 + PP_0350 0.83 -2.2 427,384 - PP_0350 0.83 +0.9 427,482 + PP_0350 0.87 +0.9 427,482 + PP_0350 0.87 -0.0 427,482 + PP_0350 0.87 -1.0 427,483 - PP_0350 0.87 +0.7 427,558 - -0.0 427,558 - +1.5 427,680 + -2.1 427,680 + -2.2 427,681 - -0.0 427,777 + +2.1 427,777 + -1.0 427,777 + +0.0 427,778 - +1.0 427,778 - -3.0 427,973 + -1.4 427,973 + +1.8 427,996 - +0.5 428,051 + +2.1 428,051 + -3.1 428,082 + +0.2 428,082 + +0.6 428,083 - +2.5 428,083 - +0.0 428,248 + PP_0351 0.21 +1.5 428,248 + PP_0351 0.21 +1.3 428,248 + PP_0351 0.21 +1.5 428,249 - PP_0351 0.21 -0.1 428,249 - PP_0351 0.21 +1.4 428,249 - PP_0351 0.21 +0.0 428,425 - PP_0351 0.39 +1.5 428,492 - PP_0351 0.46 -2.3 428,577 - PP_0351 0.55 +1.3 428,645 - PP_0351 0.62 -0.1 428,645 - PP_0351 0.62 -1.2 428,645 - PP_0351 0.62 +1.3 428,682 - PP_0351 0.66 +1.2 428,682 - PP_0351 0.66 +1.0 429,031 + -3.2 429,031 + +0.8 429,031 + -1.6 429,032 - +0.1 429,032 - -0.5 429,032 - -1.3 429,058 + PP_0352 0.11 -0.5 429,059 - PP_0352 0.11 -2.4 429,268 + PP_0352 0.51 -0.7 429,268 + PP_0352 0.51 -0.2 429,268 + PP_0352 0.51 -2.2 429,476 - -1.5 429,641 + -2.9 429,642 - +2.6 429,664 + +0.7 429,665 - +1.2 429,670 + -0.6 429,670 + +0.0 429,671 - +0.7
Or see this region's nucleotide sequence