Experiment: phage 100.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3498 and Atu3500 are separated by 527 nucleotides Atu3500 and Atu3501 are separated by 15 nucleotides
Atu3498: Atu3498 - aldehyde dehydrogenase, at 549,017 to 550,453
Atu3498
Atu3500: Atu3500 - hypothetical protein, at 550,981 to 551,793
Atu3500
Atu3501: Atu3501 - ABC transporter permease, at 551,809 to 552,834
Atu3501
Position (kb) 550
551
552 Strain fitness (log2 ratio) -1
0
1
2
3 at 550.118 kb on + strand, within Atu3498 at 550.270 kb on + strand, within Atu3498 at 550.278 kb on - strand, within Atu3498 at 550.293 kb on + strand, within Atu3498 at 550.320 kb on + strand at 550.328 kb on - strand at 550.335 kb on + strand at 550.336 kb on - strand at 550.372 kb on + strand at 550.409 kb on + strand at 550.417 kb on - strand at 550.417 kb on - strand at 550.417 kb on - strand at 550.551 kb on - strand at 550.577 kb on - strand at 550.605 kb on + strand at 550.618 kb on + strand at 550.634 kb on + strand at 550.642 kb on - strand at 550.647 kb on - strand at 550.768 kb on + strand at 550.771 kb on - strand at 550.776 kb on - strand at 550.776 kb on - strand at 550.776 kb on - strand at 550.776 kb on - strand at 550.811 kb on - strand at 550.862 kb on - strand at 550.865 kb on + strand at 550.947 kb on - strand at 550.995 kb on - strand at 551.031 kb on - strand at 551.176 kb on + strand, within Atu3500 at 551.176 kb on + strand, within Atu3500 at 551.179 kb on - strand, within Atu3500 at 551.225 kb on - strand, within Atu3500 at 551.392 kb on + strand, within Atu3500 at 551.400 kb on - strand, within Atu3500 at 551.400 kb on - strand, within Atu3500 at 551.436 kb on - strand, within Atu3500 at 551.471 kb on - strand, within Atu3500 at 551.490 kb on + strand, within Atu3500 at 551.533 kb on + strand, within Atu3500 at 551.533 kb on + strand, within Atu3500 at 551.681 kb on + strand, within Atu3500 at 551.689 kb on - strand, within Atu3500 at 551.707 kb on + strand, within Atu3500 at 551.715 kb on + strand at 551.715 kb on - strand at 551.735 kb on - strand at 551.774 kb on + strand at 551.814 kb on - strand at 551.950 kb on + strand, within Atu3501 at 552.088 kb on - strand, within Atu3501 at 552.126 kb on + strand, within Atu3501 at 552.152 kb on + strand, within Atu3501 at 552.205 kb on - strand, within Atu3501 at 552.205 kb on - strand, within Atu3501 at 552.215 kb on - strand, within Atu3501 at 552.215 kb on - strand, within Atu3501 at 552.380 kb on - strand, within Atu3501 at 552.405 kb on - strand, within Atu3501 at 552.448 kb on - strand, within Atu3501 at 552.483 kb on - strand, within Atu3501
Per-strain Table
Position Strand Gene LocusTag Fraction phage 100.2 remove 550,118 + Atu3498 0.77 -0.4 550,270 + Atu3498 0.87 +0.2 550,278 - Atu3498 0.88 -0.1 550,293 + Atu3498 0.89 -0.2 550,320 + +0.8 550,328 - +1.1 550,335 + -0.1 550,336 - -1.5 550,372 + -0.4 550,409 + +0.1 550,417 - +0.2 550,417 - -0.1 550,417 - -0.7 550,551 - +1.1 550,577 - -0.1 550,605 + -1.6 550,618 + -0.7 550,634 + +0.2 550,642 - +1.2 550,647 - +1.0 550,768 + -0.7 550,771 - -0.1 550,776 - +2.9 550,776 - +1.6 550,776 - +0.3 550,776 - -1.2 550,811 - +0.3 550,862 - +0.3 550,865 + +0.5 550,947 - +1.6 550,995 - -0.8 551,031 - +0.1 551,176 + Atu3500 0.24 -0.5 551,176 + Atu3500 0.24 +0.1 551,179 - Atu3500 0.24 +1.3 551,225 - Atu3500 0.30 +0.1 551,392 + Atu3500 0.51 -0.9 551,400 - Atu3500 0.52 +0.9 551,400 - Atu3500 0.52 +1.1 551,436 - Atu3500 0.56 -0.8 551,471 - Atu3500 0.60 +1.6 551,490 + Atu3500 0.63 -0.7 551,533 + Atu3500 0.68 -0.2 551,533 + Atu3500 0.68 +0.4 551,681 + Atu3500 0.86 +0.6 551,689 - Atu3500 0.87 +0.1 551,707 + Atu3500 0.89 -0.0 551,715 + -0.3 551,715 - +0.3 551,735 - +1.8 551,774 + -0.1 551,814 - -0.0 551,950 + Atu3501 0.14 -0.1 552,088 - Atu3501 0.27 -0.9 552,126 + Atu3501 0.31 -0.5 552,152 + Atu3501 0.33 +0.4 552,205 - Atu3501 0.39 -1.7 552,205 - Atu3501 0.39 -0.0 552,215 - Atu3501 0.40 -0.2 552,215 - Atu3501 0.40 +0.1 552,380 - Atu3501 0.56 +0.8 552,405 - Atu3501 0.58 -0.3 552,448 - Atu3501 0.62 +2.3 552,483 - Atu3501 0.66 +0.0
Or see this region's nucleotide sequence