Experiment: phage 99.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0434 and Atu0435 are separated by 56 nucleotides Atu0435 and Atu0436 are separated by 242 nucleotides Atu0436 and Atu0437 overlap by 1 nucleotides Atu0437 and Atu0438 are separated by 1 nucleotides
Atu0434: Atu0434 - 2'-deoxycytidine 5'-triphosphate deaminase, at 429,508 to 430,620
Atu0434
Atu0435: Atu0435 - tRNA-Gly, at 430,677 to 430,750
Atu0435
Atu0436: Atu0436 - hypothetical protein, at 430,993 to 433,149
Atu0436
Atu0437: Atu0437 - hypothetical protein, at 433,149 to 433,829
Atu0437
Atu0438: Atu0438 - phage-related integrase, at 433,831 to 434,859
Atu0438
Position (kb) 430
431
432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 430.141 kb on + strand, within Atu0434 at 430.405 kb on + strand, within Atu0434 at 430.665 kb on + strand at 430.680 kb on + strand at 430.717 kb on + strand, within Atu0435 at 430.725 kb on - strand, within Atu0435 at 430.856 kb on - strand at 430.875 kb on + strand at 430.875 kb on + strand at 430.875 kb on + strand at 430.883 kb on - strand at 430.929 kb on - strand at 430.940 kb on - strand at 431.009 kb on - strand at 431.100 kb on - strand at 431.125 kb on - strand at 431.145 kb on + strand at 431.147 kb on - strand at 431.147 kb on - strand at 431.161 kb on + strand at 431.169 kb on - strand at 431.191 kb on - strand at 431.271 kb on + strand, within Atu0436 at 431.327 kb on + strand, within Atu0436 at 431.420 kb on - strand, within Atu0436 at 431.739 kb on + strand, within Atu0436 at 431.768 kb on + strand, within Atu0436 at 431.823 kb on + strand, within Atu0436 at 431.838 kb on + strand, within Atu0436 at 431.863 kb on + strand, within Atu0436 at 431.920 kb on - strand, within Atu0436 at 431.957 kb on - strand, within Atu0436 at 432.103 kb on + strand, within Atu0436 at 432.147 kb on + strand, within Atu0436 at 432.155 kb on - strand, within Atu0436 at 432.211 kb on + strand, within Atu0436 at 432.280 kb on + strand, within Atu0436 at 432.280 kb on + strand, within Atu0436 at 432.319 kb on + strand, within Atu0436 at 432.333 kb on + strand, within Atu0436 at 432.338 kb on + strand, within Atu0436 at 432.359 kb on + strand, within Atu0436 at 432.359 kb on + strand, within Atu0436 at 432.367 kb on - strand, within Atu0436 at 432.389 kb on + strand, within Atu0436 at 432.402 kb on - strand, within Atu0436 at 432.528 kb on + strand, within Atu0436 at 432.612 kb on + strand, within Atu0436 at 432.612 kb on + strand, within Atu0436 at 432.711 kb on + strand, within Atu0436 at 432.772 kb on + strand, within Atu0436 at 432.806 kb on - strand, within Atu0436 at 432.850 kb on + strand, within Atu0436 at 432.850 kb on + strand, within Atu0436 at 432.858 kb on - strand, within Atu0436 at 432.861 kb on + strand, within Atu0436 at 432.876 kb on - strand, within Atu0436 at 432.878 kb on + strand, within Atu0436 at 433.333 kb on - strand, within Atu0437 at 433.346 kb on - strand, within Atu0437 at 433.516 kb on + strand, within Atu0437 at 433.519 kb on - strand, within Atu0437 at 433.574 kb on + strand, within Atu0437 at 433.633 kb on - strand, within Atu0437 at 433.653 kb on + strand, within Atu0437 at 433.846 kb on - strand at 433.866 kb on - strand at 433.875 kb on + strand at 434.003 kb on + strand, within Atu0438 at 434.013 kb on + strand, within Atu0438
Per-strain Table
Position Strand Gene LocusTag Fraction phage 99.2 remove 430,141 + Atu0434 0.57 -1.3 430,405 + Atu0434 0.81 -1.0 430,665 + -0.2 430,680 + -0.7 430,717 + Atu0435 0.54 -0.0 430,725 - Atu0435 0.65 -0.4 430,856 - -0.6 430,875 + -1.4 430,875 + -1.0 430,875 + -1.0 430,883 - +0.0 430,929 - -0.9 430,940 - -0.5 431,009 - -2.4 431,100 - -0.6 431,125 - -1.6 431,145 + -1.8 431,147 - -1.6 431,147 - -1.9 431,161 + -1.1 431,169 - -0.0 431,191 - -2.1 431,271 + Atu0436 0.13 -0.7 431,327 + Atu0436 0.15 -0.9 431,420 - Atu0436 0.20 -1.5 431,739 + Atu0436 0.35 -1.1 431,768 + Atu0436 0.36 -0.3 431,823 + Atu0436 0.38 -0.7 431,838 + Atu0436 0.39 -0.8 431,863 + Atu0436 0.40 -0.8 431,920 - Atu0436 0.43 -1.1 431,957 - Atu0436 0.45 -0.5 432,103 + Atu0436 0.51 -1.0 432,147 + Atu0436 0.54 -0.5 432,155 - Atu0436 0.54 -1.1 432,211 + Atu0436 0.56 -1.6 432,280 + Atu0436 0.60 -1.4 432,280 + Atu0436 0.60 -0.9 432,319 + Atu0436 0.61 -2.9 432,333 + Atu0436 0.62 -0.2 432,338 + Atu0436 0.62 -1.3 432,359 + Atu0436 0.63 -3.6 432,359 + Atu0436 0.63 -1.1 432,367 - Atu0436 0.64 -1.8 432,389 + Atu0436 0.65 +1.3 432,402 - Atu0436 0.65 -1.6 432,528 + Atu0436 0.71 -1.5 432,612 + Atu0436 0.75 -0.5 432,612 + Atu0436 0.75 -2.1 432,711 + Atu0436 0.80 -0.9 432,772 + Atu0436 0.82 -0.9 432,806 - Atu0436 0.84 -0.6 432,850 + Atu0436 0.86 -0.9 432,850 + Atu0436 0.86 -1.1 432,858 - Atu0436 0.86 -0.6 432,861 + Atu0436 0.87 -1.2 432,876 - Atu0436 0.87 -0.1 432,878 + Atu0436 0.87 -1.4 433,333 - Atu0437 0.27 -0.9 433,346 - Atu0437 0.29 -0.6 433,516 + Atu0437 0.54 -1.7 433,519 - Atu0437 0.54 -1.0 433,574 + Atu0437 0.62 -1.2 433,633 - Atu0437 0.71 -0.8 433,653 + Atu0437 0.74 -0.6 433,846 - -2.2 433,866 - -0.5 433,875 + +0.5 434,003 + Atu0438 0.17 -0.8 434,013 + Atu0438 0.18 -1.7
Or see this region's nucleotide sequence