Experiment: phage 99.2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5527 and Atu5528 are separated by 739 nucleotides Atu5528 and Atu5529 are separated by 431 nucleotides
Atu5527: Atu5527 - NADH-dependent FMN reductase, at 519,261 to 519,863
Atu5527
Atu5528: Atu5528 - two component sensor kinase, at 520,603 to 522,531
Atu5528
Atu5529: Atu5529 - two component sensor kinase, at 522,963 to 524,114
Atu5529
Position (kb) 520
521
522
523 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 519.659 kb on + strand, within Atu5527 at 519.702 kb on - strand, within Atu5527 at 519.703 kb on + strand, within Atu5527 at 519.711 kb on - strand, within Atu5527 at 519.711 kb on - strand, within Atu5527 at 519.732 kb on - strand, within Atu5527 at 519.743 kb on + strand, within Atu5527 at 519.851 kb on + strand at 519.972 kb on + strand at 519.980 kb on - strand at 519.996 kb on - strand at 520.053 kb on + strand at 520.061 kb on - strand at 520.079 kb on + strand at 520.087 kb on - strand at 520.087 kb on - strand at 520.087 kb on - strand at 520.276 kb on - strand at 520.280 kb on - strand at 520.339 kb on + strand at 520.349 kb on + strand at 520.349 kb on + strand at 520.357 kb on - strand at 520.736 kb on + strand at 520.741 kb on - strand at 520.761 kb on - strand at 520.772 kb on + strand at 520.772 kb on + strand at 520.772 kb on + strand at 520.780 kb on - strand at 520.891 kb on + strand, within Atu5528 at 521.034 kb on - strand, within Atu5528 at 521.034 kb on - strand, within Atu5528 at 521.034 kb on - strand, within Atu5528 at 521.046 kb on + strand, within Atu5528 at 521.046 kb on + strand, within Atu5528 at 521.046 kb on + strand, within Atu5528 at 521.054 kb on - strand, within Atu5528 at 521.054 kb on - strand, within Atu5528 at 521.054 kb on - strand, within Atu5528 at 521.054 kb on - strand, within Atu5528 at 521.054 kb on - strand, within Atu5528 at 521.140 kb on + strand, within Atu5528 at 521.150 kb on + strand, within Atu5528 at 521.205 kb on + strand, within Atu5528 at 521.205 kb on - strand, within Atu5528 at 521.207 kb on + strand, within Atu5528 at 521.213 kb on - strand, within Atu5528 at 521.215 kb on - strand, within Atu5528 at 521.242 kb on - strand, within Atu5528 at 521.328 kb on + strand, within Atu5528 at 521.345 kb on + strand, within Atu5528 at 521.345 kb on + strand, within Atu5528 at 521.345 kb on + strand, within Atu5528 at 521.345 kb on + strand, within Atu5528 at 521.361 kb on + strand, within Atu5528 at 521.409 kb on - strand, within Atu5528 at 521.441 kb on + strand, within Atu5528 at 521.449 kb on - strand, within Atu5528 at 521.497 kb on + strand, within Atu5528 at 521.503 kb on - strand, within Atu5528 at 521.524 kb on + strand, within Atu5528 at 521.605 kb on - strand, within Atu5528 at 521.606 kb on + strand, within Atu5528 at 521.625 kb on + strand, within Atu5528 at 521.683 kb on - strand, within Atu5528 at 521.859 kb on - strand, within Atu5528 at 521.899 kb on + strand, within Atu5528 at 521.936 kb on + strand, within Atu5528 at 521.966 kb on + strand, within Atu5528 at 521.966 kb on + strand, within Atu5528 at 521.976 kb on - strand, within Atu5528 at 521.976 kb on - strand, within Atu5528 at 521.986 kb on - strand, within Atu5528 at 522.000 kb on - strand, within Atu5528 at 522.035 kb on + strand, within Atu5528 at 522.041 kb on + strand, within Atu5528 at 522.131 kb on - strand, within Atu5528 at 522.312 kb on + strand, within Atu5528 at 522.346 kb on + strand at 522.393 kb on + strand at 522.398 kb on + strand at 522.445 kb on - strand at 522.445 kb on - strand at 522.474 kb on - strand at 522.514 kb on + strand at 522.514 kb on + strand at 522.529 kb on - strand at 522.539 kb on - strand at 522.540 kb on - strand at 522.547 kb on - strand at 522.567 kb on + strand at 522.590 kb on + strand at 522.645 kb on + strand at 522.647 kb on + strand at 522.673 kb on - strand at 522.689 kb on + strand at 522.712 kb on + strand at 522.712 kb on + strand at 522.712 kb on + strand at 522.720 kb on - strand at 522.772 kb on + strand at 522.780 kb on - strand at 522.788 kb on - strand at 522.790 kb on + strand at 522.800 kb on + strand at 522.846 kb on - strand at 522.864 kb on + strand at 522.902 kb on + strand at 522.912 kb on + strand at 522.912 kb on + strand at 522.920 kb on - strand at 522.920 kb on - strand at 523.016 kb on + strand at 523.024 kb on - strand at 523.079 kb on + strand, within Atu5529 at 523.089 kb on + strand, within Atu5529 at 523.089 kb on + strand, within Atu5529 at 523.184 kb on + strand, within Atu5529 at 523.192 kb on - strand, within Atu5529 at 523.273 kb on - strand, within Atu5529 at 523.398 kb on + strand, within Atu5529 at 523.409 kb on + strand, within Atu5529 at 523.422 kb on - strand, within Atu5529 at 523.531 kb on - strand, within Atu5529
Per-strain Table
Position Strand Gene LocusTag Fraction phage 99.2 remove 519,659 + Atu5527 0.66 -1.9 519,702 - Atu5527 0.73 -1.0 519,703 + Atu5527 0.73 -0.2 519,711 - Atu5527 0.75 -1.6 519,711 - Atu5527 0.75 +1.0 519,732 - Atu5527 0.78 +0.5 519,743 + Atu5527 0.80 +0.6 519,851 + +0.6 519,972 + +1.8 519,980 - -0.2 519,996 - -0.1 520,053 + +0.1 520,061 - -0.3 520,079 + +1.6 520,087 - -0.2 520,087 - -0.3 520,087 - +0.3 520,276 - -0.4 520,280 - -0.4 520,339 + +2.2 520,349 + -0.7 520,349 + +0.4 520,357 - -0.1 520,736 + -0.1 520,741 - +0.2 520,761 - +0.0 520,772 + -0.0 520,772 + +0.8 520,772 + +1.2 520,780 - +0.0 520,891 + Atu5528 0.15 +2.8 521,034 - Atu5528 0.22 +0.4 521,034 - Atu5528 0.22 +0.2 521,034 - Atu5528 0.22 -2.0 521,046 + Atu5528 0.23 +0.2 521,046 + Atu5528 0.23 -0.1 521,046 + Atu5528 0.23 +0.5 521,054 - Atu5528 0.23 +0.2 521,054 - Atu5528 0.23 +2.2 521,054 - Atu5528 0.23 +0.4 521,054 - Atu5528 0.23 -1.0 521,054 - Atu5528 0.23 +1.1 521,140 + Atu5528 0.28 +0.2 521,150 + Atu5528 0.28 -0.7 521,205 + Atu5528 0.31 -0.3 521,205 - Atu5528 0.31 +0.3 521,207 + Atu5528 0.31 -0.5 521,213 - Atu5528 0.32 +0.0 521,215 - Atu5528 0.32 +0.6 521,242 - Atu5528 0.33 -0.0 521,328 + Atu5528 0.38 +0.7 521,345 + Atu5528 0.38 +0.7 521,345 + Atu5528 0.38 +0.7 521,345 + Atu5528 0.38 +0.4 521,345 + Atu5528 0.38 +0.8 521,361 + Atu5528 0.39 -1.7 521,409 - Atu5528 0.42 -1.4 521,441 + Atu5528 0.43 -0.4 521,449 - Atu5528 0.44 +0.1 521,497 + Atu5528 0.46 +0.7 521,503 - Atu5528 0.47 +0.7 521,524 + Atu5528 0.48 +0.8 521,605 - Atu5528 0.52 -0.0 521,606 + Atu5528 0.52 +0.0 521,625 + Atu5528 0.53 +0.1 521,683 - Atu5528 0.56 +1.2 521,859 - Atu5528 0.65 -1.9 521,899 + Atu5528 0.67 +1.0 521,936 + Atu5528 0.69 +0.3 521,966 + Atu5528 0.71 +1.2 521,966 + Atu5528 0.71 -0.4 521,976 - Atu5528 0.71 +0.3 521,976 - Atu5528 0.71 -0.1 521,986 - Atu5528 0.72 -0.4 522,000 - Atu5528 0.72 +1.2 522,035 + Atu5528 0.74 +0.2 522,041 + Atu5528 0.75 +0.6 522,131 - Atu5528 0.79 -0.8 522,312 + Atu5528 0.89 +1.1 522,346 + +0.3 522,393 + -0.2 522,398 + -0.1 522,445 - +0.6 522,445 - -1.1 522,474 - -0.5 522,514 + +0.4 522,514 + +0.4 522,529 - -0.4 522,539 - -0.6 522,540 - -0.1 522,547 - +1.8 522,567 + +0.2 522,590 + +1.5 522,645 + +0.8 522,647 + -0.1 522,673 - +0.2 522,689 + +0.6 522,712 + -1.3 522,712 + -0.0 522,712 + -0.2 522,720 - -0.0 522,772 + +0.7 522,780 - +0.1 522,788 - +0.0 522,790 + -0.5 522,800 + -1.0 522,846 - +0.3 522,864 + -0.2 522,902 + -0.4 522,912 + +1.8 522,912 + +1.1 522,920 - +1.8 522,920 - +0.9 523,016 + +0.7 523,024 - -0.7 523,079 + Atu5529 0.10 +0.7 523,089 + Atu5529 0.11 -1.1 523,089 + Atu5529 0.11 +1.8 523,184 + Atu5529 0.19 -0.3 523,192 - Atu5529 0.20 -0.0 523,273 - Atu5529 0.27 -0.1 523,398 + Atu5529 0.38 -0.8 523,409 + Atu5529 0.39 -1.4 523,422 - Atu5529 0.40 -1.4 523,531 - Atu5529 0.49 -0.4
Or see this region's nucleotide sequence