Strain Fitness in Agrobacterium fabrum C58 around Atu0474

Experiment: phage 99.2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0473 and Atu0474 are separated by 76 nucleotidesAtu0474 and Atu0475 overlap by 4 nucleotidesAtu0475 and Atu0476 are separated by 268 nucleotides Atu0473: Atu0473 - hypothetical protein, at 461,846 to 462,760 Atu0473 Atu0474: Atu0474 - putative RNA polymerase sigma-70 factor, at 462,837 to 463,382 Atu0474 Atu0475: Atu0475 - hypothetical protein, at 463,379 to 464,083 Atu0475 Atu0476: Atu0476 - aquaporin, at 464,352 to 465,077 Atu0476 Position (kb) 462 463 464Strain fitness (log2 ratio) -2 -1 0 1 2at 461.940 kb on + strand, within Atu0473at 461.947 kb on + strand, within Atu0473at 461.948 kb on - strand, within Atu0473at 461.950 kb on - strand, within Atu0473at 461.950 kb on - strand, within Atu0473at 461.955 kb on - strand, within Atu0473at 461.978 kb on - strand, within Atu0473at 462.012 kb on - strand, within Atu0473at 462.028 kb on + strand, within Atu0473at 462.119 kb on - strand, within Atu0473at 462.119 kb on - strand, within Atu0473at 462.119 kb on - strand, within Atu0473at 462.186 kb on + strand, within Atu0473at 462.268 kb on - strand, within Atu0473at 462.268 kb on - strand, within Atu0473at 462.319 kb on + strand, within Atu0473at 462.319 kb on + strand, within Atu0473at 462.327 kb on - strand, within Atu0473at 462.333 kb on - strand, within Atu0473at 462.390 kb on - strand, within Atu0473at 462.409 kb on + strand, within Atu0473at 462.469 kb on + strand, within Atu0473at 462.487 kb on - strand, within Atu0473at 462.516 kb on - strand, within Atu0473at 462.625 kb on - strand, within Atu0473at 462.630 kb on - strand, within Atu0473at 462.635 kb on - strand, within Atu0473at 462.635 kb on - strand, within Atu0473at 462.650 kb on + strand, within Atu0473at 462.882 kb on - strandat 463.010 kb on + strand, within Atu0474at 463.015 kb on + strand, within Atu0474at 463.026 kb on + strand, within Atu0474at 463.034 kb on - strand, within Atu0474at 463.034 kb on - strand, within Atu0474at 463.034 kb on - strand, within Atu0474at 463.137 kb on + strand, within Atu0474at 463.153 kb on + strand, within Atu0474at 463.419 kb on + strandat 463.424 kb on + strandat 463.424 kb on + strandat 463.444 kb on + strandat 463.452 kb on - strand, within Atu0475at 463.475 kb on + strand, within Atu0475at 463.475 kb on + strand, within Atu0475at 463.539 kb on + strand, within Atu0475at 463.564 kb on - strand, within Atu0475at 463.564 kb on - strand, within Atu0475at 463.564 kb on - strand, within Atu0475at 463.662 kb on + strand, within Atu0475at 463.715 kb on + strand, within Atu0475at 463.745 kb on - strand, within Atu0475at 463.834 kb on - strand, within Atu0475at 463.837 kb on - strand, within Atu0475at 463.861 kb on + strand, within Atu0475at 463.861 kb on + strand, within Atu0475at 463.867 kb on + strand, within Atu0475at 463.869 kb on - strand, within Atu0475at 463.869 kb on - strand, within Atu0475at 463.876 kb on + strand, within Atu0475at 463.876 kb on + strand, within Atu0475at 463.876 kb on + strand, within Atu0475at 463.879 kb on - strand, within Atu0475at 463.884 kb on - strand, within Atu0475at 463.884 kb on - strand, within Atu0475at 463.884 kb on - strand, within Atu0475at 463.932 kb on + strand, within Atu0475at 463.987 kb on + strand, within Atu0475at 464.009 kb on - strand, within Atu0475at 464.009 kb on - strand, within Atu0475at 464.127 kb on - strandat 464.220 kb on + strandat 464.228 kb on - strandat 464.228 kb on - strandat 464.347 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage 99.2
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461,940 + Atu0473 0.10 +0.0
461,947 + Atu0473 0.11 +0.5
461,948 - Atu0473 0.11 -0.1
461,950 - Atu0473 0.11 -0.8
461,950 - Atu0473 0.11 +2.2
461,955 - Atu0473 0.12 -1.2
461,978 - Atu0473 0.14 -0.3
462,012 - Atu0473 0.18 +0.0
462,028 + Atu0473 0.20 -1.0
462,119 - Atu0473 0.30 -1.9
462,119 - Atu0473 0.30 -0.3
462,119 - Atu0473 0.30 -0.0
462,186 + Atu0473 0.37 -0.1
462,268 - Atu0473 0.46 -0.9
462,268 - Atu0473 0.46 +1.9
462,319 + Atu0473 0.52 -0.0
462,319 + Atu0473 0.52 +0.2
462,327 - Atu0473 0.53 -0.4
462,333 - Atu0473 0.53 +1.2
462,390 - Atu0473 0.59 +1.0
462,409 + Atu0473 0.62 -0.5
462,469 + Atu0473 0.68 -0.5
462,487 - Atu0473 0.70 -0.1
462,516 - Atu0473 0.73 -0.8
462,625 - Atu0473 0.85 +0.0
462,630 - Atu0473 0.86 -0.6
462,635 - Atu0473 0.86 -0.3
462,635 - Atu0473 0.86 -0.8
462,650 + Atu0473 0.88 +0.0
462,882 - -1.6
463,010 + Atu0474 0.32 +1.5
463,015 + Atu0474 0.33 +0.0
463,026 + Atu0474 0.35 +0.5
463,034 - Atu0474 0.36 -0.8
463,034 - Atu0474 0.36 -0.2
463,034 - Atu0474 0.36 -0.7
463,137 + Atu0474 0.55 -0.1
463,153 + Atu0474 0.58 +0.2
463,419 + +0.3
463,424 + +0.7
463,424 + -0.1
463,444 + +1.0
463,452 - Atu0475 0.10 +0.1
463,475 + Atu0475 0.14 -0.0
463,475 + Atu0475 0.14 +1.0
463,539 + Atu0475 0.23 -1.1
463,564 - Atu0475 0.26 -0.3
463,564 - Atu0475 0.26 -0.2
463,564 - Atu0475 0.26 -0.3
463,662 + Atu0475 0.40 +0.4
463,715 + Atu0475 0.48 +1.2
463,745 - Atu0475 0.52 -0.9
463,834 - Atu0475 0.65 -0.8
463,837 - Atu0475 0.65 +0.1
463,861 + Atu0475 0.68 +0.4
463,861 + Atu0475 0.68 -0.4
463,867 + Atu0475 0.69 -0.2
463,869 - Atu0475 0.70 +0.1
463,869 - Atu0475 0.70 -1.1
463,876 + Atu0475 0.70 -0.4
463,876 + Atu0475 0.70 -0.1
463,876 + Atu0475 0.70 +1.5
463,879 - Atu0475 0.71 +0.8
463,884 - Atu0475 0.72 -0.4
463,884 - Atu0475 0.72 +0.8
463,884 - Atu0475 0.72 -0.5
463,932 + Atu0475 0.78 +1.8
463,987 + Atu0475 0.86 -0.3
464,009 - Atu0475 0.89 -0.8
464,009 - Atu0475 0.89 +1.1
464,127 - -0.0
464,220 + +0.5
464,228 - +0.7
464,228 - +0.1
464,347 + -0.2

Or see this region's nucleotide sequence