Experiment: phage 99.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0472 and Atu0473 are separated by 88 nucleotides Atu0473 and Atu0474 are separated by 76 nucleotides Atu0474 and Atu0475 overlap by 4 nucleotides
Atu0472: Atu0472 - hypothetical protein, at 461,200 to 461,757
Atu0472
Atu0473: Atu0473 - hypothetical protein, at 461,846 to 462,760
Atu0473
Atu0474: Atu0474 - putative RNA polymerase sigma-70 factor, at 462,837 to 463,382
Atu0474
Atu0475: Atu0475 - hypothetical protein, at 463,379 to 464,083
Atu0475
Position (kb) 461
462
463 Strain fitness (log2 ratio) -1
0
1 at 460.867 kb on - strand at 460.951 kb on + strand at 460.957 kb on - strand at 461.078 kb on - strand at 461.122 kb on + strand at 461.147 kb on + strand at 461.154 kb on - strand at 461.210 kb on - strand at 461.353 kb on + strand, within Atu0472 at 461.354 kb on + strand, within Atu0472 at 461.409 kb on + strand, within Atu0472 at 461.419 kb on + strand, within Atu0472 at 461.440 kb on - strand, within Atu0472 at 461.454 kb on + strand, within Atu0472 at 461.454 kb on + strand, within Atu0472 at 461.454 kb on + strand, within Atu0472 at 461.462 kb on - strand, within Atu0472 at 461.467 kb on + strand, within Atu0472 at 461.512 kb on + strand, within Atu0472 at 461.512 kb on + strand, within Atu0472 at 461.520 kb on - strand, within Atu0472 at 461.520 kb on - strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.547 kb on + strand, within Atu0472 at 461.555 kb on - strand, within Atu0472 at 461.555 kb on - strand, within Atu0472 at 461.555 kb on - strand, within Atu0472 at 461.690 kb on - strand, within Atu0472 at 461.714 kb on + strand at 461.714 kb on - strand at 461.940 kb on + strand, within Atu0473 at 461.947 kb on + strand, within Atu0473 at 461.948 kb on - strand, within Atu0473 at 461.950 kb on - strand, within Atu0473 at 461.950 kb on - strand, within Atu0473 at 461.955 kb on - strand, within Atu0473 at 461.978 kb on - strand, within Atu0473 at 462.012 kb on - strand, within Atu0473 at 462.028 kb on + strand, within Atu0473 at 462.119 kb on - strand, within Atu0473 at 462.119 kb on - strand, within Atu0473 at 462.119 kb on - strand, within Atu0473 at 462.186 kb on + strand, within Atu0473 at 462.268 kb on - strand, within Atu0473 at 462.268 kb on - strand, within Atu0473 at 462.319 kb on + strand, within Atu0473 at 462.319 kb on + strand, within Atu0473 at 462.327 kb on - strand, within Atu0473 at 462.333 kb on - strand, within Atu0473 at 462.390 kb on - strand, within Atu0473 at 462.409 kb on + strand, within Atu0473 at 462.469 kb on + strand, within Atu0473 at 462.487 kb on - strand, within Atu0473 at 462.516 kb on - strand, within Atu0473 at 462.625 kb on - strand, within Atu0473 at 462.630 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.650 kb on + strand, within Atu0473 at 462.882 kb on - strand at 463.010 kb on + strand, within Atu0474 at 463.015 kb on + strand, within Atu0474 at 463.026 kb on + strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.137 kb on + strand, within Atu0474 at 463.153 kb on + strand, within Atu0474 at 463.419 kb on + strand at 463.424 kb on + strand at 463.424 kb on + strand at 463.444 kb on + strand at 463.452 kb on - strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.539 kb on + strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.662 kb on + strand, within Atu0475 at 463.715 kb on + strand, within Atu0475 at 463.745 kb on - strand, within Atu0475
Per-strain Table
Position Strand Gene LocusTag Fraction phage 99.1 remove 460,867 - -0.7 460,951 + +0.4 460,957 - +1.3 461,078 - -0.1 461,122 + +0.6 461,147 + -0.5 461,154 - +0.8 461,210 - +0.2 461,353 + Atu0472 0.27 +0.1 461,354 + Atu0472 0.28 -0.4 461,409 + Atu0472 0.37 -0.2 461,419 + Atu0472 0.39 +0.6 461,440 - Atu0472 0.43 -0.2 461,454 + Atu0472 0.46 +0.1 461,454 + Atu0472 0.46 -1.1 461,454 + Atu0472 0.46 -0.4 461,462 - Atu0472 0.47 +0.1 461,467 + Atu0472 0.48 +0.5 461,512 + Atu0472 0.56 +0.9 461,512 + Atu0472 0.56 -0.7 461,520 - Atu0472 0.57 +0.2 461,520 - Atu0472 0.57 +0.1 461,547 + Atu0472 0.62 -0.5 461,547 + Atu0472 0.62 +0.4 461,547 + Atu0472 0.62 -0.2 461,547 + Atu0472 0.62 -0.2 461,547 + Atu0472 0.62 +0.0 461,547 + Atu0472 0.62 -0.1 461,547 + Atu0472 0.62 +0.4 461,555 - Atu0472 0.64 -0.4 461,555 - Atu0472 0.64 -0.4 461,555 - Atu0472 0.64 +0.1 461,690 - Atu0472 0.88 -0.8 461,714 + -0.2 461,714 - -1.2 461,940 + Atu0473 0.10 -0.0 461,947 + Atu0473 0.11 +0.9 461,948 - Atu0473 0.11 -0.5 461,950 - Atu0473 0.11 -0.8 461,950 - Atu0473 0.11 +1.2 461,955 - Atu0473 0.12 -0.5 461,978 - Atu0473 0.14 +0.0 462,012 - Atu0473 0.18 +0.0 462,028 + Atu0473 0.20 -0.0 462,119 - Atu0473 0.30 -0.4 462,119 - Atu0473 0.30 -0.1 462,119 - Atu0473 0.30 +0.5 462,186 + Atu0473 0.37 +0.0 462,268 - Atu0473 0.46 +0.1 462,268 - Atu0473 0.46 +0.5 462,319 + Atu0473 0.52 -0.2 462,319 + Atu0473 0.52 +0.9 462,327 - Atu0473 0.53 +0.3 462,333 - Atu0473 0.53 +0.8 462,390 - Atu0473 0.59 -1.4 462,409 + Atu0473 0.62 -0.9 462,469 + Atu0473 0.68 -0.9 462,487 - Atu0473 0.70 -0.3 462,516 - Atu0473 0.73 +0.2 462,625 - Atu0473 0.85 -0.0 462,630 - Atu0473 0.86 -0.6 462,635 - Atu0473 0.86 -0.3 462,635 - Atu0473 0.86 -0.2 462,650 + Atu0473 0.88 +0.3 462,882 - -0.5 463,010 + Atu0474 0.32 +0.6 463,015 + Atu0474 0.33 -0.1 463,026 + Atu0474 0.35 +0.1 463,034 - Atu0474 0.36 -0.6 463,034 - Atu0474 0.36 -0.1 463,034 - Atu0474 0.36 +0.4 463,137 + Atu0474 0.55 -0.5 463,153 + Atu0474 0.58 -0.5 463,419 + +0.1 463,424 + +0.6 463,424 + +0.3 463,444 + +0.6 463,452 - Atu0475 0.10 -0.4 463,475 + Atu0475 0.14 -0.3 463,475 + Atu0475 0.14 +0.2 463,539 + Atu0475 0.23 -0.4 463,564 - Atu0475 0.26 +0.4 463,564 - Atu0475 0.26 +0.1 463,564 - Atu0475 0.26 -0.8 463,662 + Atu0475 0.40 -0.2 463,715 + Atu0475 0.48 -1.1 463,745 - Atu0475 0.52 -0.2
Or see this region's nucleotide sequence