Strain Fitness in Agrobacterium fabrum C58 around Atu3521

Experiment: phage 95.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3520 and Atu3521 are separated by 147 nucleotidesAtu3521 and Atu3522 are separated by 81 nucleotides Atu3520: Atu3520 - preprotein translocase subunit SecA, at 567,257 to 569,965 Atu3520 Atu3521: Atu3521 - permease, at 570,113 to 571,006 Atu3521 Atu3522: Atu3522 - glucans biosynthesis protein, at 571,088 to 572,290 Atu3522 Position (kb) 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2 3at 570.003 kb on - strandat 570.052 kb on + strandat 570.083 kb on - strandat 570.243 kb on + strand, within Atu3521at 570.442 kb on + strand, within Atu3521at 570.442 kb on + strand, within Atu3521at 570.475 kb on - strand, within Atu3521at 570.604 kb on - strand, within Atu3521at 570.633 kb on - strand, within Atu3521at 570.731 kb on - strand, within Atu3521at 570.795 kb on + strand, within Atu3521at 570.837 kb on + strand, within Atu3521at 570.931 kb on + strandat 571.135 kb on - strandat 571.137 kb on - strandat 571.147 kb on - strandat 571.172 kb on + strandat 571.172 kb on + strandat 571.212 kb on - strand, within Atu3522at 571.229 kb on + strand, within Atu3522at 571.252 kb on + strand, within Atu3522at 571.698 kb on - strand, within Atu3522

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage 95.1
remove
570,003 - -1.3
570,052 + -1.0
570,083 - -1.4
570,243 + Atu3521 0.15 +0.7
570,442 + Atu3521 0.37 +3.3
570,442 + Atu3521 0.37 +0.1
570,475 - Atu3521 0.40 +1.5
570,604 - Atu3521 0.55 +1.9
570,633 - Atu3521 0.58 -1.1
570,731 - Atu3521 0.69 +0.5
570,795 + Atu3521 0.76 +2.0
570,837 + Atu3521 0.81 +0.0
570,931 + -0.3
571,135 - +0.6
571,137 - -0.1
571,147 - -0.9
571,172 + +0.4
571,172 + -2.2
571,212 - Atu3522 0.10 -0.5
571,229 + Atu3522 0.12 +1.0
571,252 + Atu3522 0.14 -0.5
571,698 - Atu3522 0.51 -0.7

Or see this region's nucleotide sequence