Experiment: phage 95.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1630 and Atu1631 are separated by 14 nucleotides Atu1631 and Atu1632 are separated by 242 nucleotides
Atu1630: Atu1630 - phospholipase D family protein, at 1,615,171 to 1,616,727
Atu1630
Atu1631: Atu1631 - two component response regulator, at 1,616,742 to 1,617,491
Atu1631
Atu1632: Atu1632 - dimethylglycine dehydrogenase, at 1,617,734 to 1,620,247
Atu1632
Position (kb)
1616
1617
1618 Strain fitness (log2 ratio)
-2
-1
0
1 at 1615.769 kb on - strand, within Atu1630 at 1615.848 kb on - strand, within Atu1630 at 1615.871 kb on - strand, within Atu1630 at 1615.974 kb on - strand, within Atu1630 at 1616.029 kb on + strand, within Atu1630 at 1616.039 kb on + strand, within Atu1630 at 1616.053 kb on + strand, within Atu1630 at 1616.164 kb on - strand, within Atu1630 at 1616.250 kb on + strand, within Atu1630 at 1616.258 kb on - strand, within Atu1630 at 1616.258 kb on - strand, within Atu1630 at 1616.330 kb on + strand, within Atu1630 at 1616.372 kb on + strand, within Atu1630 at 1616.372 kb on + strand, within Atu1630 at 1616.372 kb on + strand, within Atu1630 at 1616.380 kb on - strand, within Atu1630 at 1616.387 kb on + strand, within Atu1630 at 1616.448 kb on - strand, within Atu1630 at 1616.592 kb on - strand at 1616.846 kb on + strand, within Atu1631 at 1616.865 kb on - strand, within Atu1631 at 1616.893 kb on - strand, within Atu1631 at 1616.904 kb on + strand, within Atu1631 at 1617.121 kb on + strand, within Atu1631 at 1617.346 kb on - strand, within Atu1631 at 1617.416 kb on + strand, within Atu1631 at 1617.476 kb on + strand at 1617.496 kb on - strand at 1617.539 kb on - strand at 1617.595 kb on - strand at 1617.665 kb on + strand at 1617.693 kb on - strand at 1618.084 kb on - strand, within Atu1632 at 1618.253 kb on + strand, within Atu1632 at 1618.346 kb on - strand, within Atu1632 at 1618.352 kb on - strand, within Atu1632 at 1618.375 kb on - strand, within Atu1632 at 1618.407 kb on - strand, within Atu1632 at 1618.471 kb on + strand, within Atu1632 at 1618.471 kb on + strand, within Atu1632 at 1618.471 kb on + strand, within Atu1632 at 1618.471 kb on + strand, within Atu1632 at 1618.479 kb on - strand, within Atu1632 at 1618.479 kb on - strand, within Atu1632 at 1618.479 kb on - strand, within Atu1632 at 1618.479 kb on - strand, within Atu1632
Per-strain Table
Position Strand Gene LocusTag Fraction phage 95.1 remove 1,615,769 - Atu1630 0.38 +1.3 1,615,848 - Atu1630 0.43 +0.7 1,615,871 - Atu1630 0.45 +1.1 1,615,974 - Atu1630 0.52 +0.5 1,616,029 + Atu1630 0.55 -0.7 1,616,039 + Atu1630 0.56 +0.1 1,616,053 + Atu1630 0.57 +0.2 1,616,164 - Atu1630 0.64 -0.3 1,616,250 + Atu1630 0.69 -0.5 1,616,258 - Atu1630 0.70 +0.3 1,616,258 - Atu1630 0.70 +0.3 1,616,330 + Atu1630 0.74 +1.3 1,616,372 + Atu1630 0.77 +0.3 1,616,372 + Atu1630 0.77 -0.7 1,616,372 + Atu1630 0.77 -0.0 1,616,380 - Atu1630 0.78 +0.3 1,616,387 + Atu1630 0.78 -1.3 1,616,448 - Atu1630 0.82 -2.5 1,616,592 - -0.2 1,616,846 + Atu1631 0.14 +0.3 1,616,865 - Atu1631 0.16 -0.3 1,616,893 - Atu1631 0.20 +0.5 1,616,904 + Atu1631 0.22 -0.9 1,617,121 + Atu1631 0.51 -0.3 1,617,346 - Atu1631 0.81 -0.1 1,617,416 + Atu1631 0.90 +0.1 1,617,476 + -0.6 1,617,496 - -0.3 1,617,539 - -1.5 1,617,595 - -0.4 1,617,665 + +1.1 1,617,693 - -0.3 1,618,084 - Atu1632 0.14 +0.0 1,618,253 + Atu1632 0.21 -0.2 1,618,346 - Atu1632 0.24 -0.8 1,618,352 - Atu1632 0.25 +1.0 1,618,375 - Atu1632 0.25 +0.5 1,618,407 - Atu1632 0.27 +0.1 1,618,471 + Atu1632 0.29 -1.4 1,618,471 + Atu1632 0.29 -0.5 1,618,471 + Atu1632 0.29 +0.2 1,618,471 + Atu1632 0.29 -0.4 1,618,479 - Atu1632 0.30 -0.3 1,618,479 - Atu1632 0.30 -1.5 1,618,479 - Atu1632 0.30 -0.0 1,618,479 - Atu1632 0.30 -1.1
Or see this region's nucleotide sequence