Strain Fitness in Escherichia coli BW25113 around b1385

Experiment: M9 Glucose 0.2%, Thauer's vit mix

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfeaR and feaB are separated by 235 nucleotidesfeaB and tynA are separated by 57 nucleotides b1384: feaR - DNA-binding transcriptional dual regulator (NCBI), at 1,444,402 to 1,445,307 feaR b1385: feaB - phenylacetaldehyde dehydrogenase (VIMSS), at 1,445,543 to 1,447,042 feaB b1386: tynA - tyramine oxidase, copper-requiring (NCBI), at 1,447,100 to 1,449,373 tynA Position (kb) 1445 1446 1447 1448Strain fitness (log2 ratio) -2 -1 0 1at 1444.581 kb on - strand, within feaRat 1444.611 kb on - strand, within feaRat 1444.640 kb on - strand, within feaRat 1444.787 kb on - strand, within feaRat 1444.845 kb on - strand, within feaRat 1444.866 kb on - strand, within feaRat 1444.866 kb on - strand, within feaRat 1444.872 kb on - strand, within feaRat 1444.935 kb on - strand, within feaRat 1445.072 kb on + strand, within feaRat 1445.230 kb on - strandat 1445.600 kb on - strandat 1445.620 kb on - strandat 1445.830 kb on + strand, within feaBat 1445.843 kb on - strand, within feaBat 1445.934 kb on - strand, within feaBat 1445.934 kb on - strand, within feaBat 1445.934 kb on - strand, within feaBat 1445.979 kb on - strand, within feaBat 1446.256 kb on + strand, within feaBat 1446.256 kb on - strand, within feaBat 1446.256 kb on - strand, within feaBat 1446.316 kb on + strand, within feaBat 1446.351 kb on + strand, within feaBat 1446.475 kb on + strand, within feaBat 1446.475 kb on + strand, within feaBat 1446.572 kb on - strand, within feaBat 1446.628 kb on - strand, within feaBat 1446.628 kb on - strand, within feaBat 1446.688 kb on + strand, within feaBat 1446.897 kb on - strandat 1446.946 kb on - strandat 1447.128 kb on - strandat 1447.201 kb on + strandat 1447.254 kb on + strandat 1447.254 kb on + strandat 1447.262 kb on - strandat 1447.278 kb on - strandat 1447.296 kb on - strandat 1447.296 kb on - strandat 1447.365 kb on + strand, within tynAat 1447.365 kb on + strand, within tynAat 1447.594 kb on + strand, within tynAat 1447.887 kb on + strand, within tynAat 1447.996 kb on - strand, within tynAat 1448.027 kb on - strand, within tynAat 1448.027 kb on - strand, within tynA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 Glucose 0.2%, Thauer's vit mix
remove
1,444,581 - feaR b1384 0.20 +0.1
1,444,611 - feaR b1384 0.23 -0.0
1,444,640 - feaR b1384 0.26 +0.2
1,444,787 - feaR b1384 0.42 +0.0
1,444,845 - feaR b1384 0.49 +0.0
1,444,866 - feaR b1384 0.51 +0.4
1,444,866 - feaR b1384 0.51 +0.3
1,444,872 - feaR b1384 0.52 +0.3
1,444,935 - feaR b1384 0.59 -0.7
1,445,072 + feaR b1384 0.74 +0.3
1,445,230 - -0.4
1,445,600 - +0.1
1,445,620 - -0.1
1,445,830 + feaB b1385 0.19 +0.1
1,445,843 - feaB b1385 0.20 +0.6
1,445,934 - feaB b1385 0.26 +0.2
1,445,934 - feaB b1385 0.26 -0.1
1,445,934 - feaB b1385 0.26 -0.4
1,445,979 - feaB b1385 0.29 +0.6
1,446,256 + feaB b1385 0.48 -0.1
1,446,256 - feaB b1385 0.48 -0.1
1,446,256 - feaB b1385 0.48 +0.0
1,446,316 + feaB b1385 0.52 -0.3
1,446,351 + feaB b1385 0.54 +0.2
1,446,475 + feaB b1385 0.62 +0.8
1,446,475 + feaB b1385 0.62 -0.3
1,446,572 - feaB b1385 0.69 +1.3
1,446,628 - feaB b1385 0.72 -2.1
1,446,628 - feaB b1385 0.72 -0.4
1,446,688 + feaB b1385 0.76 -0.2
1,446,897 - +0.6
1,446,946 - -0.2
1,447,128 - +0.2
1,447,201 + +0.4
1,447,254 + +0.1
1,447,254 + +0.1
1,447,262 - +0.1
1,447,278 - +0.1
1,447,296 - +0.2
1,447,296 - +0.3
1,447,365 + tynA b1386 0.12 -0.1
1,447,365 + tynA b1386 0.12 +0.4
1,447,594 + tynA b1386 0.22 -0.5
1,447,887 + tynA b1386 0.35 +0.3
1,447,996 - tynA b1386 0.39 -0.6
1,448,027 - tynA b1386 0.41 -0.1
1,448,027 - tynA b1386 0.41 +0.5

Or see this region's nucleotide sequence