Strain Fitness in Pseudomonas simiae WCS417 around PS417_16310

Experiment: growth on LB_noSalt plate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16295 and PS417_16305 are separated by 398 nucleotidesPS417_16305 and PS417_16310 are separated by 152 nucleotidesPS417_16310 and PS417_16315 are separated by 62 nucleotides PS417_16295: PS417_16295 - hypothetical protein, at 3,569,855 to 3,570,187 _16295 PS417_16305: PS417_16305 - tRNA-Ser, at 3,570,586 to 3,570,676 _16305 PS417_16310: PS417_16310 - membrane protein, at 3,570,829 to 3,571,500 _16310 PS417_16315: PS417_16315 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 3,571,563 to 3,572,582 _16315 Position (kb) 3570 3571 3572Strain fitness (log2 ratio) -2 -1 0 1 2at 3569.853 kb on + strandat 3569.856 kb on + strandat 3569.947 kb on + strand, within PS417_16295at 3569.947 kb on + strand, within PS417_16295at 3569.949 kb on + strand, within PS417_16295at 3569.949 kb on + strand, within PS417_16295at 3569.949 kb on + strand, within PS417_16295at 3569.949 kb on + strand, within PS417_16295at 3569.949 kb on + strand, within PS417_16295at 3569.949 kb on + strand, within PS417_16295at 3569.989 kb on - strand, within PS417_16295at 3570.040 kb on - strandat 3570.040 kb on - strand, within PS417_16295at 3570.063 kb on - strand, within PS417_16295at 3570.181 kb on - strandat 3570.209 kb on - strandat 3570.312 kb on - strandat 3570.318 kb on - strandat 3570.365 kb on - strandat 3570.365 kb on - strandat 3570.383 kb on - strandat 3570.425 kb on - strandat 3570.484 kb on + strandat 3570.535 kb on + strandat 3570.535 kb on + strandat 3570.536 kb on - strandat 3570.845 kb on - strandat 3570.907 kb on + strand, within PS417_16310at 3570.988 kb on - strand, within PS417_16310at 3571.012 kb on + strand, within PS417_16310at 3571.013 kb on - strand, within PS417_16310at 3571.204 kb on + strandat 3571.405 kb on - strand, within PS417_16310at 3571.408 kb on + strand, within PS417_16310at 3571.409 kb on - strand, within PS417_16310at 3571.409 kb on - strand, within PS417_16310at 3571.432 kb on + strand, within PS417_16310at 3571.432 kb on + strand, within PS417_16310at 3571.432 kb on + strand, within PS417_16310at 3571.433 kb on - strandat 3571.444 kb on + strandat 3571.564 kb on + strandat 3571.564 kb on + strandat 3571.565 kb on - strandat 3571.565 kb on - strandat 3571.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth on LB_noSalt plate
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3,569,853 + -0.0
3,569,856 + +0.0
3,569,947 + PS417_16295 0.28 -0.2
3,569,947 + PS417_16295 0.28 +1.3
3,569,949 + PS417_16295 0.28 -0.6
3,569,949 + PS417_16295 0.28 -1.6
3,569,949 + PS417_16295 0.28 +0.5
3,569,949 + PS417_16295 0.28 -0.1
3,569,949 + PS417_16295 0.28 -0.4
3,569,949 + PS417_16295 0.28 +1.0
3,569,989 - PS417_16295 0.40 +0.1
3,570,040 - +1.8
3,570,040 - PS417_16295 0.56 -0.4
3,570,063 - PS417_16295 0.62 -0.4
3,570,181 - -0.4
3,570,209 - -0.7
3,570,312 - +0.2
3,570,318 - -0.4
3,570,365 - -0.4
3,570,365 - -0.5
3,570,383 - +0.4
3,570,425 - +0.0
3,570,484 + +1.8
3,570,535 + -0.0
3,570,535 + -0.5
3,570,536 - +0.0
3,570,845 - +0.3
3,570,907 + PS417_16310 0.12 -1.3
3,570,988 - PS417_16310 0.24 -2.2
3,571,012 + PS417_16310 0.27 -1.3
3,571,013 - PS417_16310 0.27 -2.5
3,571,204 + -1.3
3,571,405 - PS417_16310 0.86 -2.0
3,571,408 + PS417_16310 0.86 -1.8
3,571,409 - PS417_16310 0.86 -2.6
3,571,409 - PS417_16310 0.86 -1.9
3,571,432 + PS417_16310 0.90 -1.5
3,571,432 + PS417_16310 0.90 -0.9
3,571,432 + PS417_16310 0.90 -2.2
3,571,433 - -1.0
3,571,444 + -2.3
3,571,564 + -1.3
3,571,564 + +1.0
3,571,565 - +0.6
3,571,565 - -0.4
3,571,568 - -0.3

Or see this region's nucleotide sequence