Experiment: no extra (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0037 and PP_0039 are separated by 298 nucleotides PP_0039 and PP_0040 are separated by 127 nucleotides PP_0040 and PP_0041 are separated by 92 nucleotides
PP_0037: PP_0037 - porin P, at 40,469 to 41,758
_0037
PP_0039: PP_0039 - hypothetical protein, at 42,057 to 43,082
_0039
PP_0040: PP_0040 - hypothetical protein, at 43,210 to 43,434
_0040
PP_0041: PP_0041 - cadmium translocating P-type ATPase, at 43,527 to 45,524
_0041
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.075 kb on + strand, within PP_0037 at 41.082 kb on + strand, within PP_0037 at 41.082 kb on + strand, within PP_0037 at 41.082 kb on + strand, within PP_0037 at 41.082 kb on + strand, within PP_0037 at 41.082 kb on + strand, within PP_0037 at 41.082 kb on + strand, within PP_0037 at 41.082 kb on + strand, within PP_0037 at 41.082 kb on + strand, within PP_0037 at 41.083 kb on - strand, within PP_0037 at 41.083 kb on - strand, within PP_0037 at 41.083 kb on - strand, within PP_0037 at 41.083 kb on - strand, within PP_0037 at 41.141 kb on + strand, within PP_0037 at 41.141 kb on + strand, within PP_0037 at 41.142 kb on - strand, within PP_0037 at 41.212 kb on - strand, within PP_0037 at 41.212 kb on - strand, within PP_0037 at 41.215 kb on + strand, within PP_0037 at 41.215 kb on + strand, within PP_0037 at 41.215 kb on + strand, within PP_0037 at 41.216 kb on - strand, within PP_0037 at 41.216 kb on - strand, within PP_0037 at 41.216 kb on - strand, within PP_0037 at 41.216 kb on - strand, within PP_0037 at 41.360 kb on + strand, within PP_0037 at 41.360 kb on + strand, within PP_0037 at 41.360 kb on + strand, within PP_0037 at 41.361 kb on - strand, within PP_0037 at 41.361 kb on - strand, within PP_0037 at 41.418 kb on - strand, within PP_0037 at 41.420 kb on + strand, within PP_0037 at 41.435 kb on + strand, within PP_0037 at 41.435 kb on + strand, within PP_0037 at 41.435 kb on + strand, within PP_0037 at 41.435 kb on + strand, within PP_0037 at 41.435 kb on + strand, within PP_0037 at 41.459 kb on - strand, within PP_0037 at 41.462 kb on + strand, within PP_0037 at 41.462 kb on + strand, within PP_0037 at 41.462 kb on + strand, within PP_0037 at 41.462 kb on + strand, within PP_0037 at 41.463 kb on - strand, within PP_0037 at 41.463 kb on - strand, within PP_0037 at 41.463 kb on - strand, within PP_0037 at 41.463 kb on - strand, within PP_0037 at 41.491 kb on + strand, within PP_0037 at 41.492 kb on - strand, within PP_0037 at 41.534 kb on + strand, within PP_0037 at 41.549 kb on - strand, within PP_0037 at 41.549 kb on - strand, within PP_0037 at 41.636 kb on + strand at 41.636 kb on + strand at 41.637 kb on - strand at 41.637 kb on - strand at 41.637 kb on - strand at 41.669 kb on + strand at 41.669 kb on + strand at 41.669 kb on + strand at 41.670 kb on - strand at 41.670 kb on - strand at 41.670 kb on - strand at 41.670 kb on - strand at 41.670 kb on - strand at 41.670 kb on - strand at 41.747 kb on + strand at 41.747 kb on + strand at 41.747 kb on + strand at 41.748 kb on - strand at 41.748 kb on - strand at 41.748 kb on - strand at 41.748 kb on - strand at 41.748 kb on - strand at 41.856 kb on + strand at 41.856 kb on + strand at 41.856 kb on + strand at 41.857 kb on - strand at 41.966 kb on + strand at 41.967 kb on - strand at 42.015 kb on + strand at 42.016 kb on - strand at 42.016 kb on - strand at 42.052 kb on + strand at 42.052 kb on + strand at 42.052 kb on + strand at 42.053 kb on - strand at 42.053 kb on - strand at 42.246 kb on + strand, within PP_0039 at 42.246 kb on + strand, within PP_0039 at 42.246 kb on + strand, within PP_0039 at 42.246 kb on + strand, within PP_0039 at 42.247 kb on - strand, within PP_0039 at 42.247 kb on - strand, within PP_0039 at 42.247 kb on - strand, within PP_0039 at 42.247 kb on - strand, within PP_0039 at 42.247 kb on - strand, within PP_0039 at 42.247 kb on - strand, within PP_0039 at 42.255 kb on + strand, within PP_0039 at 42.256 kb on - strand, within PP_0039 at 42.286 kb on + strand, within PP_0039 at 42.287 kb on - strand, within PP_0039 at 42.287 kb on - strand, within PP_0039 at 42.340 kb on + strand, within PP_0039 at 42.341 kb on - strand, within PP_0039 at 42.457 kb on + strand, within PP_0039 at 42.457 kb on + strand, within PP_0039 at 42.458 kb on - strand, within PP_0039 at 42.458 kb on - strand, within PP_0039 at 42.507 kb on - strand, within PP_0039 at 42.615 kb on + strand, within PP_0039 at 42.615 kb on + strand, within PP_0039 at 42.615 kb on + strand, within PP_0039 at 42.616 kb on - strand, within PP_0039 at 42.625 kb on + strand, within PP_0039 at 42.757 kb on - strand, within PP_0039 at 42.795 kb on + strand, within PP_0039 at 42.795 kb on + strand, within PP_0039 at 42.795 kb on + strand, within PP_0039 at 42.932 kb on + strand, within PP_0039 at 42.933 kb on - strand, within PP_0039 at 42.951 kb on + strand, within PP_0039 at 42.951 kb on + strand, within PP_0039 at 42.952 kb on - strand, within PP_0039 at 42.952 kb on - strand, within PP_0039 at 42.952 kb on - strand, within PP_0039 at 42.952 kb on - strand, within PP_0039 at 42.999 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.010 kb on - strand at 43.076 kb on + strand at 43.076 kb on + strand at 43.076 kb on + strand at 43.077 kb on - strand at 43.077 kb on - strand at 43.126 kb on + strand at 43.127 kb on - strand at 43.127 kb on - strand at 43.205 kb on + strand at 43.205 kb on + strand at 43.206 kb on - strand at 43.206 kb on - strand at 43.206 kb on - strand at 43.206 kb on - strand at 43.206 kb on - strand at 43.206 kb on - strand at 43.209 kb on + strand at 43.209 kb on + strand at 43.210 kb on - strand at 43.210 kb on - strand at 43.273 kb on + strand, within PP_0040 at 43.273 kb on + strand, within PP_0040 at 43.274 kb on - strand, within PP_0040 at 43.274 kb on - strand, within PP_0040 at 43.368 kb on - strand, within PP_0040 at 43.444 kb on - strand at 43.474 kb on + strand at 43.474 kb on + strand at 43.474 kb on + strand at 43.480 kb on + strand at 43.480 kb on + strand at 43.481 kb on - strand at 43.502 kb on + strand at 43.502 kb on + strand at 43.502 kb on + strand at 43.502 kb on + strand at 43.502 kb on + strand at 43.502 kb on + strand at 43.503 kb on - strand at 43.503 kb on - strand at 43.503 kb on - strand at 43.503 kb on - strand at 43.543 kb on + strand at 43.751 kb on + strand, within PP_0041 at 43.751 kb on + strand, within PP_0041 at 43.941 kb on + strand, within PP_0041 at 43.941 kb on + strand, within PP_0041 at 43.941 kb on + strand, within PP_0041 at 43.942 kb on - strand, within PP_0041 at 43.942 kb on - strand, within PP_0041 at 43.942 kb on - strand, within PP_0041 at 43.960 kb on - strand, within PP_0041 at 43.960 kb on - strand, within PP_0041 at 44.024 kb on + strand, within PP_0041 at 44.024 kb on + strand, within PP_0041 at 44.024 kb on + strand, within PP_0041 at 44.025 kb on - strand, within PP_0041 at 44.025 kb on - strand, within PP_0041 at 44.025 kb on - strand, within PP_0041 at 44.070 kb on + strand, within PP_0041
Per-strain Table
Position Strand Gene LocusTag Fraction no extra (N); with MOPS remove 41,075 + PP_0037 0.47 -0.1 41,082 + PP_0037 0.48 +0.5 41,082 + PP_0037 0.48 +0.2 41,082 + PP_0037 0.48 -1.5 41,082 + PP_0037 0.48 -1.5 41,082 + PP_0037 0.48 -3.5 41,082 + PP_0037 0.48 +0.1 41,082 + PP_0037 0.48 +1.8 41,082 + PP_0037 0.48 -0.7 41,083 - PP_0037 0.48 +0.3 41,083 - PP_0037 0.48 +0.5 41,083 - PP_0037 0.48 +1.1 41,083 - PP_0037 0.48 +1.0 41,141 + PP_0037 0.52 -2.2 41,141 + PP_0037 0.52 -1.7 41,142 - PP_0037 0.52 +0.4 41,212 - PP_0037 0.58 +0.3 41,212 - PP_0037 0.58 -3.1 41,215 + PP_0037 0.58 -0.0 41,215 + PP_0037 0.58 -2.5 41,215 + PP_0037 0.58 +1.7 41,216 - PP_0037 0.58 +0.2 41,216 - PP_0037 0.58 -0.8 41,216 - PP_0037 0.58 +0.7 41,216 - PP_0037 0.58 +0.1 41,360 + PP_0037 0.69 +0.7 41,360 + PP_0037 0.69 +0.1 41,360 + PP_0037 0.69 -1.0 41,361 - PP_0037 0.69 +0.5 41,361 - PP_0037 0.69 -0.0 41,418 - PP_0037 0.74 +0.6 41,420 + PP_0037 0.74 +0.4 41,435 + PP_0037 0.75 +0.1 41,435 + PP_0037 0.75 +1.4 41,435 + PP_0037 0.75 +0.1 41,435 + PP_0037 0.75 -0.2 41,435 + PP_0037 0.75 +0.6 41,459 - PP_0037 0.77 +0.5 41,462 + PP_0037 0.77 +0.2 41,462 + PP_0037 0.77 +1.7 41,462 + PP_0037 0.77 +1.2 41,462 + PP_0037 0.77 +2.5 41,463 - PP_0037 0.77 -0.2 41,463 - PP_0037 0.77 -2.0 41,463 - PP_0037 0.77 +0.6 41,463 - PP_0037 0.77 -2.7 41,491 + PP_0037 0.79 -0.4 41,492 - PP_0037 0.79 +1.1 41,534 + PP_0037 0.83 -1.5 41,549 - PP_0037 0.84 +1.0 41,549 - PP_0037 0.84 -0.7 41,636 + +1.1 41,636 + -1.6 41,637 - -0.5 41,637 - +0.7 41,637 - +0.4 41,669 + -0.5 41,669 + +0.2 41,669 + +0.3 41,670 - +0.9 41,670 - +0.4 41,670 - +2.3 41,670 - +0.9 41,670 - +0.2 41,670 - +0.6 41,747 + -0.0 41,747 + -0.8 41,747 + +1.4 41,748 - -0.3 41,748 - -1.5 41,748 - -0.9 41,748 - +0.3 41,748 - -0.1 41,856 + -0.1 41,856 + -0.5 41,856 + -1.9 41,857 - +0.7 41,966 + +0.7 41,967 - -2.0 42,015 + +0.9 42,016 - -0.8 42,016 - -0.4 42,052 + -0.4 42,052 + -0.2 42,052 + +0.1 42,053 - -1.0 42,053 - -0.2 42,246 + PP_0039 0.18 -1.1 42,246 + PP_0039 0.18 -0.0 42,246 + PP_0039 0.18 -2.3 42,246 + PP_0039 0.18 -0.5 42,247 - PP_0039 0.19 -1.7 42,247 - PP_0039 0.19 -1.3 42,247 - PP_0039 0.19 -1.6 42,247 - PP_0039 0.19 +0.2 42,247 - PP_0039 0.19 +1.0 42,247 - PP_0039 0.19 -1.8 42,255 + PP_0039 0.19 +0.7 42,256 - PP_0039 0.19 +0.5 42,286 + PP_0039 0.22 +0.0 42,287 - PP_0039 0.22 +0.3 42,287 - PP_0039 0.22 +0.1 42,340 + PP_0039 0.28 -1.1 42,341 - PP_0039 0.28 -1.0 42,457 + PP_0039 0.39 -0.7 42,457 + PP_0039 0.39 -0.4 42,458 - PP_0039 0.39 -0.6 42,458 - PP_0039 0.39 -1.8 42,507 - PP_0039 0.44 +0.7 42,615 + PP_0039 0.54 -0.6 42,615 + PP_0039 0.54 -1.0 42,615 + PP_0039 0.54 -0.3 42,616 - PP_0039 0.54 -1.3 42,625 + PP_0039 0.55 -0.0 42,757 - PP_0039 0.68 -1.0 42,795 + PP_0039 0.72 -0.0 42,795 + PP_0039 0.72 +1.0 42,795 + PP_0039 0.72 -0.5 42,932 + PP_0039 0.85 +0.7 42,933 - PP_0039 0.85 +1.0 42,951 + PP_0039 0.87 -1.9 42,951 + PP_0039 0.87 +0.3 42,952 - PP_0039 0.87 -0.3 42,952 - PP_0039 0.87 -0.4 42,952 - PP_0039 0.87 -0.5 42,952 - PP_0039 0.87 -1.2 42,999 + +0.6 43,009 + -1.2 43,009 + +1.0 43,009 + +0.7 43,009 + -1.8 43,009 + -0.3 43,010 - +0.9 43,076 + -0.9 43,076 + +1.0 43,076 + +1.1 43,077 - +0.2 43,077 - -0.5 43,126 + -3.1 43,127 - -0.9 43,127 - +0.2 43,205 + +0.4 43,205 + -0.1 43,206 - -1.5 43,206 - -1.1 43,206 - -1.4 43,206 - -2.3 43,206 - -0.7 43,206 - -0.0 43,209 + -0.5 43,209 + -1.2 43,210 - -1.2 43,210 - -0.3 43,273 + PP_0040 0.28 +2.1 43,273 + PP_0040 0.28 +0.5 43,274 - PP_0040 0.28 +1.7 43,274 - PP_0040 0.28 -1.0 43,368 - PP_0040 0.70 +0.9 43,444 - +0.2 43,474 + +1.2 43,474 + -0.6 43,474 + +1.1 43,480 + -0.7 43,480 + +1.1 43,481 - -1.2 43,502 + +0.3 43,502 + +1.0 43,502 + +1.2 43,502 + +1.1 43,502 + +0.6 43,502 + +0.6 43,503 - -2.0 43,503 - -1.9 43,503 - -1.6 43,503 - +1.7 43,543 + -1.3 43,751 + PP_0041 0.11 -2.5 43,751 + PP_0041 0.11 -1.4 43,941 + PP_0041 0.21 -0.3 43,941 + PP_0041 0.21 -0.7 43,941 + PP_0041 0.21 -1.6 43,942 - PP_0041 0.21 -1.2 43,942 - PP_0041 0.21 +0.7 43,942 - PP_0041 0.21 -1.0 43,960 - PP_0041 0.22 -2.1 43,960 - PP_0041 0.22 -0.7 44,024 + PP_0041 0.25 +1.7 44,024 + PP_0041 0.25 -1.6 44,024 + PP_0041 0.25 -0.2 44,025 - PP_0041 0.25 +0.7 44,025 - PP_0041 0.25 -0.2 44,025 - PP_0041 0.25 +1.6 44,070 + PP_0041 0.27 -0.1
Or see this region's nucleotide sequence